Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45200 409 / 7e-147 ATGOS12, GOS12 golgi snare 12 (.1.2) AT1G15880 124 / 5e-35 ATGOS11, GOS11 golgi snare 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009285 [exp] 424 / 1e-152 AT2G45200 444 / 2e-160 golgi snare 12 (.1.2) Lus10030294 [exp] 318 / 1e-110 AT2G45200 297 / 2e-102 golgi snare 12 (.1.2) Lus10015880 [exp] 127 / 2e-37 AT2G45200 151 / 3e-47 golgi snare 12 (.1.2) Lus10026058 [exp] 112 / 2e-30 AT1G15880 288 / 4e-100 golgi snare 11 (.1) Lus10014349 [exp] 94 / 5e-24 AT1G15880 214 / 7e-72 golgi snare 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066800 [exp] 401 / 2e-143 AT2G45200 372 / 3e-132 golgi snare 12 (.1.2) Potri.002G145200 [exp] 372 / 6e-132 AT2G45200 365 / 3e-129 golgi snare 12 (.1.2) Potri.001G047100 [exp] 126 / 8e-36 AT1G15880 369 / 2e-131 golgi snare 11 (.1) Potri.003G180800 [exp] 124 / 5e-35 AT1G15880 365 / 4e-130 golgi snare 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF12352 [flax] [poplar] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus
Representative CDS sequence Show only first row Show all	>Lus10001986 pacid=23140507 polypeptide=Lus10001986 locus=Lus10001986.g ID=Lus10001986.BGIv1.0 annot-version=v1.0 ATGACGGATCCAAGTCTTGAACTGCAAGAATCAGGCTGGGAAGAGCTCAGACGTGAAGCTCGCAAGATCGAGGGAGATCTTGACGTTAAGCTCTCTTCCT ACGCTAAGCTCGGCGCTCGATTCACTCAAGCTGGATATGTTGAGACTGGATCCCAAGCTGTTGCATCCAGCGGGTCATGGAAATCTATGGAAATGGAAAT CCAGTCACTGCTTGAGAAGCTATTAGACATTAATGACTCGATGAGTAGATGTGCAGCGTCTGCAGCACCAACTACTTCGGTAAATCAAAAGCTTGCGAGA CACCGAGACATACTCCACGAGTTCACTCAGGAATTCAGAAGAATCAAGGGAAACATACACTCGATGAAGGAGCATGCCGAATTACTCAGTTCAGTGAGAG ATGATATCAGTGAGTACAAGGCTTCAGGAAGCATGTCTCCCAAAATGCAAATACTACGTGAAAGAGCTGCCATCCATGGAAGCATCTCTCATATAGATGA TGTTATAAGTCAGGCTCAGGCAACCAGGGCTGTCTTGGGATCTCAGAGGTCTTTCTTTGGAGACGTTCAAGGGAAAGTGAAACACTTGAGTGACAAATTC CCAGTCATCCGCGGCCTACTTGGTTCGATCAGGAGGCGCCGTTCGAGAGACACGCTTATTCTGTCTGCTGTCATTGCAGCTTGTACGTTGTTTCTCATCA TCTATTGGCTCTCTAAATGA
AA sequence Show only first row Show all	>Lus10001986 pacid=23140507 polypeptide=Lus10001986 locus=Lus10001986.g ID=Lus10001986.BGIv1.0 annot-version=v1.0 MTDPSLELQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQAGYVETGSQAVASSGSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVNQKLAR HRDILHEFTQEFRRIKGNIHSMKEHAELLSSVRDDISEYKASGSMSPKMQILRERAAIHGSISHIDDVISQAQATRAVLGSQRSFFGDVQGKVKHLSDKF PVIRGLLGSIRRRRSRDTLILSAVIAACTLFLIIYWLSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10001986 [exp]	0	1
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000347 [exp]	1.0	0.8831
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10036916 [exp]	3.9	0.7920
AT4G23710		VAG2 ,VATG2 ,VH...	vacuolar ATP synthase subunit ...		Lus10021301 [exp]	6.7	0.7795
AT5G03440			unknown protein		Lus10026537 [exp]	7.7	0.7447
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10024418 [exp]	8.0	0.7996
AT4G16444			unknown protein		Lus10016696 [exp]	9.4	0.7051
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10026435 [exp]	9.9	0.7424
AT3G10860			Cytochrome b-c1 complex, subun...		Lus10034442 [exp]	13.4	0.7498
AT3G07470			Protein of unknown function, D...		Lus10039620 [exp]	14.9	0.7569
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10004213 [exp]	16.1	0.7540

Compare expression of checked genes

Lus10001986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.