Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60740 1082 / 0 TFCD, EMB133, CHO, TTN1 TITAN 1, TUBULIN FOLDING COFACTOR D, EMBRYO DEFECTIVE 133, CHAMPIGNON, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030293 [exp] 1657 / 0 AT3G60740 1647 / 0.0 TITAN 1, TUBULIN FOLDING COFACTOR D, EMBRYO DEFECTIVE 133, CHAMPIGNON, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G067400 [exp] 1247 / 0 AT3G60740 1664 / 0.0 TITAN 1, TUBULIN FOLDING COFACTOR D, EMBRYO DEFECTIVE 133, CHAMPIGNON, ARM repeat superfamily protein (.1) Potri.002G145750 [exp] 56 / 2e-09 AT3G60740 67 / 1e-14 TITAN 1, TUBULIN FOLDING COFACTOR D, EMBRYO DEFECTIVE 133, CHAMPIGNON, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12612 [flax] [poplar] TFCD_C Tubulin folding cofactor D C terminal
Representative CDS sequence Show only first row Show all	>Lus10001987 pacid=23140513 polypeptide=Lus10001987 locus=Lus10001987.g ID=Lus10001987.BGIv1.0 annot-version=v1.0 ATGACCGCAACCGAAAAGGAAAGTTCGAAAGAGGATTACAAAGCGGCTTTTTCAGTGGAAGAAGTTGAGGAAGACGAGCATGATAGCAAAGAACGAGTTC TACAGAAGTACTTCTTGCTGGAGTGGAAACTCGTCAAGTCCTTACTCGATGACATCCTCGCCAATGGCCGCGTCGTCGATCTCTCTTCCGTCCACAAGAT CCGATCCATCATGGACAAGTATCAGGAGGAGGGGCAGCTAGTGGAGCCATACCTTGAGAGCATTGTGTCTCCATTGATGTTGATTATACGTTCGAGAACA ATTGACTTAGGAGTTAATTCTGAGGAGATTCTCCAAGTTATGAAACCTATTTGCATAATCCTTTATACTCTGGTGACTGTTTGCGGACACAAGGCTGTTA CAAAGTTCTTCCCGCACCAGGTCTCAGACCTGGAGCTGGCGGTTTCGCTTTTGGACAAGTGCCACAAAACTGCTTCAGCGACGTCCCTGCGGCAGGAGAG CACCGGGGAAATGGAGGCTCAATGTGTCATTCTTCTGTGGCTTTCTGTTCTTGTCTTGGTCCCGTTCGACATTTCCTCCATTGATACAAGCATTGCACAA GGGAGTGGAGATGAGCCAGGTCCTCTGGTGTTGAAGATTTTGAACTTCTCCAAGGACTATCTCTCCAGTGCTGGTCCAATGCGCACTATGTCTGGGTTAC TGCTCTCTAGGCTTCTATCTCGACCTGATATGCCAATGGCTTTCACTAGCTTTCTGGGATGGATTCATGAAGTGTTGACTTCTAGCACAGACGATACAAT GTCACATTTTCGGCTACTAGGTGTTTTGGAAGCGCTAGCTGCCATCTTCAAGACAGGTGCACGAAAACAACTGATAGATGTGGTTCCCGTTGTGTGGGGT GATGTTTCATTGTTGTCAAAGTCCACCATGGCTTCTCGTAGTCCTTTGCTCCGTAAATTACTGGTGAAGTTATGTCAGAGAATTGCACTTATATGCCTTC CTCACCGTGCACCAGTCTGGCGTTATGTGGGGAAAACCAGTTCACTCAGAGAGAATGTAACTTTGACTGCTATTGAAGGATCCGATGGACGCAGTCGAGA TCTGAGCATCAACCTTGGTGAATCAGAAAGGACTGCAAACTGCGTTCAAGATGATGACATGGATGTTCCAGAAATAATTGAAGAGATCATCGAGATGCTA CTTTCAGGACTAAAAGACACGGACACAGTTGTACGTTGGTCTGCGGCGAAAGGCATGGGGAGATTAACTTCACGTTTGACTTCTGCACTTTCAGATGAGA TATTGTCTTCAGTTTTGGAGCTATTTTCTCCTGGTGAGGGTGATGGTTCATGGCATGGAGCCTGCTTAGCTTTGGCTGAACTAGCACGTAGAGGACTGCT GTTACCCACCAGTCTACCAAAAGTTGTACCTTTCGTTGCAAAGGGGAAAACCAGTTCACTCAGAGAGAATGTAACTTTGACTGCTATTGAAGGATCCGAT GGACGCAGTCGAGATCTGAGCATCAACCTTGGTGAATCAGAAAGGACTGCAAACTGCGTTCAAGATGATGACATGGATGTTCCAGAAATAATTGAAGAGA TCATCGAGATGCTACTTTCAGGACTAAAAGACACGGACACAGTTGTACGTTGGTCTGCGGCGAAAGGCATGGGGAGATTAACTTCACGTTTGACTTCTGC ACTTTCAGATGAGATATTGTCTTCAGTTTTGGAGCTATTTTCTCCTGGTGAGGGTGATGGTTCATGGCATGGAGCCTGCTTAGCTTTGGCTGAACTAGCA CGTAGAGGACTGCTGTTACCCACCAGTCTACCTAAAGTTGTACCTTTCGTGGCAAAGGCCTTACATTATGATGTTCGAAGAGGTCCACATAGTGTTGGAT CCCATGTTCGTGATGCTGCTGCATATGTTTGTTGGGCATTTGGTCGTGCATATTATCATTCTGACATGAAAGCTATACTGGAGAAGTTTGCGCCACACCT CTTAACTGTGGCCTGCTATGACCGGGAGGTGAATTGCAGAAGAGCAGTGGCAGCTGCCTTTCAGGAAAATGTAGGAAGACAAGGGAACTTTCCTCATGGC ATAGACATAGTCAATTCTGCAGATTATTTTTCACTTTCGTCCCGAGTTAATTCTTACCTTCATGTGGCCGTCCATATTGCTGGACATGATGGATACCTGT ACCCATTTGAAGAGGAACTTCTGGATACCAAGATAGGGCACTGGGATAAAGGCCTGAGAGAACTTGCCTCCGAAGCTCTTTCTGCTCTTGTGAAATATGA TCCTCAGTATTTCGAACGCTTCGTCTTGGAGAAATTAATTCCTTCTACTCTATCATCTGATTTGTGTGTGCGTCATGGTGCAATTTTATCATCAGCAGAA GTTGTGCTGGCTCTGCATCAATGTCAATACACTCTTACTACAGACAAACAGAAGCAACTTGCTGGAGTTATCCCTGCTATTGAGAAAGCACGTCTGTATC GAGGGAAGGGTGGAGAAATAATGCGCTCTGCTGTTTCTCGGTTTATCGAATGCATCTCTATCTCTGGTGTGGTGGTACCTGAAAGGATAAGACGAAGTTT GCTTGATACTATAACTGAGAACCTAAGACATCCTAATAGTCAAATACAGAATGCGGCTGTTAAAGCCCTGGAGCAGTTCGTTCAAGCTTATCTCGGGACG GCAAACAGCGGAGGAACAGGCGCTATTGTGTCAAAGTACCTTCAACAGTTGGGTGACCAAAATGTCGCAGTAAGAAGAGGGTCCGCTCTGGCATTAGGTG TTTTGCCATATGAGATATTGGCTGACAAGTGGAAAGATGTCATTTTGAAGCTTTGCAAATCTTCTGCAATTGAGGATAACCCTGATGACAGGGATGCTGA AGCACGAGTAAATGCTGTCAAAGGACTCGTATCAGTCTGCAAGACCTTAAGTCAGGCCAGAAAACTTCGGGAAATGTCCCCTGAACAGGAGGATGACTTG TCTCTTTATCATCTGATGAGGAATGAAGTGATGATCAGTTTACTTGGAGCTCTTGATGATTATTCTGTCGATAACAGGGGTGATGTCGGTTCTTGGGTCC GTGAAGCTGCCATTGAAGGCCTCAAGGACTGTACATATATCCTCTGTTCTGTGGATATAGAAGAAAGAAACCCCAACCTTCCATTCTTGGATGAAAAACT TGCTAATGCTGTGGTTGGGGGACTTGTTAAGCAAGCTGTAGAAAAAATGGATAAGCTAAGAGAAGCTGCTGCAAAGGCTCTTCAAACAATTCTGTATAAC AGGAAGCTATTCGTCCCGTCCATACCGTATAGGGAAAAGCTAGAGGAAATCATTCCGGATGAATCCGATACAAAATGGGCGGTACCGAACTTCTCGTATC CGCGATTCGTGCAGTTACTCCAGTTTAGTTGTTACAGTAGTTTTCTGGTATCTGGCTTAGTGGTTTCGGTTGGTGGGTTGCAAGACTCTTTGAGGAAGGC ATCAATTGCTTCATTGTTGGACTATCTTCAAGTGTCATCCACTGAACATCCACATCAGAGAAGGTTAAGAGAGAAAATGCTAAGTAGTGACATCCTTTCG GTTCTTCAACGGTACGTGAGATGCGACAGAGTCATTGTGCCAACCTTGAAGACAATCGAAATCCTCTTCAGCAGAAGGATTTTCTTGGACATGGAGGCCG AGACTCGAACGTTTTTCGATGGTGTTTTGGAGTCTCTTCTTGCGGAATTGAAGGCATCGAAGGACTTTGGAAAGCTGTACGCTGGTATTGCCATACTAGG CTACATTGCCTCAACATCAGAACCTGTCAACATTCAGGCTTTAACTCAGCTTCTTACTTTCCTCGGCCATCGATATCCCAAGAAGAAAAAGAAACCCATC TCTCACCATTTCCTTTTGTCCACCACTCCCGAAACTCAGATCAGGAAAGCTTCAGCAGAACAAGTGTATCTTGTTCTCCTACAGAACACCGATCTCCTGC CAGAGGATAAGATAGAGGAAGCGCTGGAAATCATCTCAGAGACGTGCTGGGACGGAGATGTCGACGGGGCAAAGAACCAATTAGTGACATTGTGGCAAAT GGCTGGTCTGGAACTAGCACAACTCAAGGTTGGAATTCGTCCAACAAGGGTGGTAAAGGTGACTACTACACCGAAGGACGACCAAGACGAGAACGCCTCG TATTCGTCGCTCGTCGAGTCAACTGGGTTCTGA
AA sequence Show only first row Show all	>Lus10001987 pacid=23140513 polypeptide=Lus10001987 locus=Lus10001987.g ID=Lus10001987.BGIv1.0 annot-version=v1.0 MTATEKESSKEDYKAAFSVEEVEEDEHDSKERVLQKYFLLEWKLVKSLLDDILANGRVVDLSSVHKIRSIMDKYQEEGQLVEPYLESIVSPLMLIIRSRT IDLGVNSEEILQVMKPICIILYTLVTVCGHKAVTKFFPHQVSDLELAVSLLDKCHKTASATSLRQESTGEMEAQCVILLWLSVLVLVPFDISSIDTSIAQ GSGDEPGPLVLKILNFSKDYLSSAGPMRTMSGLLLSRLLSRPDMPMAFTSFLGWIHEVLTSSTDDTMSHFRLLGVLEALAAIFKTGARKQLIDVVPVVWG DVSLLSKSTMASRSPLLRKLLVKLCQRIALICLPHRAPVWRYVGKTSSLRENVTLTAIEGSDGRSRDLSINLGESERTANCVQDDDMDVPEIIEEIIEML LSGLKDTDTVVRWSAAKGMGRLTSRLTSALSDEILSSVLELFSPGEGDGSWHGACLALAELARRGLLLPTSLPKVVPFVAKGKTSSLRENVTLTAIEGSD GRSRDLSINLGESERTANCVQDDDMDVPEIIEEIIEMLLSGLKDTDTVVRWSAAKGMGRLTSRLTSALSDEILSSVLELFSPGEGDGSWHGACLALAELA RRGLLLPTSLPKVVPFVAKALHYDVRRGPHSVGSHVRDAAAYVCWAFGRAYYHSDMKAILEKFAPHLLTVACYDREVNCRRAVAAAFQENVGRQGNFPHG IDIVNSADYFSLSSRVNSYLHVAVHIAGHDGYLYPFEEELLDTKIGHWDKGLRELASEALSALVKYDPQYFERFVLEKLIPSTLSSDLCVRHGAILSSAE VVLALHQCQYTLTTDKQKQLAGVIPAIEKARLYRGKGGEIMRSAVSRFIECISISGVVVPERIRRSLLDTITENLRHPNSQIQNAAVKALEQFVQAYLGT ANSGGTGAIVSKYLQQLGDQNVAVRRGSALALGVLPYEILADKWKDVILKLCKSSAIEDNPDDRDAEARVNAVKGLVSVCKTLSQARKLREMSPEQEDDL SLYHLMRNEVMISLLGALDDYSVDNRGDVGSWVREAAIEGLKDCTYILCSVDIEERNPNLPFLDEKLANAVVGGLVKQAVEKMDKLREAAAKALQTILYN RKLFVPSIPYREKLEEIIPDESDTKWAVPNFSYPRFVQLLQFSCYSSFLVSGLVVSVGGLQDSLRKASIASLLDYLQVSSTEHPHQRRLREKMLSSDILS VLQRYVRCDRVIVPTLKTIEILFSRRIFLDMEAETRTFFDGVLESLLAELKASKDFGKLYAGIAILGYIASTSEPVNIQALTQLLTFLGHRYPKKKKKPI SHHFLLSTTPETQIRKASAEQVYLVLLQNTDLLPEDKIEEALEIISETCWDGDVDGAKNQLVTLWQMAGLELAQLKVGIRPTRVVKVTTTPKDDQDENAS YSSLVESTGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10001987 [exp]	0	1
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	3.2	0.9407
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016727 [exp]	3.3	0.9476
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10020228 [exp]	6.0	0.9060
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019588 [exp]	7.5	0.9274
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006876 [exp]	12.2	0.9336
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	12.5	0.9340
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10004052 [exp]	13.0	0.9218
AT3G50110		PTEN2B, ATPEN3	phosphatase and TENsin homolog...		Lus10010266 [exp]	15.0	0.9122
AT1G26170			ARM repeat superfamily protein...		Lus10031911 [exp]	15.1	0.9278
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	15.8	0.9328

Compare expression of checked genes

Lus10001987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.