Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00080 150 / 2e-45 UNE11 unfertilized embryo sac 11, Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62770 126 / 3e-36 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 113 / 5e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G12390 112 / 1e-30 PME1 pectin methylesterase inhibitor 1 (.1) AT4G25260 108 / 3e-29 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 101 / 1e-26 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 93 / 3e-23 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 92 / 4e-23 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G20740 91 / 2e-22 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 89 / 1e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030292 [exp] 390 / 4e-140 AT4G00080 158 / 1e-48 unfertilized embryo sac 11, Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 122 / 2e-34 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 119 / 2e-33 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038914 [exp] 110 / 6e-30 AT5G62350 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027198 [exp] 109 / 8e-30 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10032230 [exp] 107 / 1e-28 AT1G62770 166 / 9e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10024593 [exp] 100 / 5e-26 AT1G62770 162 / 2e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 84 / 6e-20 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 81 / 7e-19 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G145800 [exp] 182 / 3e-58 AT4G00080 164 / 4e-51 unfertilized embryo sac 11, Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.014G067500 [exp] 175 / 6e-55 AT4G00080 156 / 1e-47 unfertilized embryo sac 11, Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 117 / 8e-33 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 117 / 1e-32 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 114 / 2e-31 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.006G137800 [exp] 102 / 1e-26 AT5G20740 205 / 2e-67 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 99 / 2e-25 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.008G132600 [exp] 96 / 4e-24 AT1G14890 216 / 1e-71 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128200 [exp] 90 / 2e-22 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 89 / 7e-22 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10001988 pacid=23140518 polypeptide=Lus10001988 locus=Lus10001988.g ID=Lus10001988.BGIv1.0 annot-version=v1.0 ATGGCGACCACCACCACCACCACCCATTTCCTCCCTCTCCTTTTCCTAATCCTCCTCACCCTCGCCGTCTCCGTAAACTCGAACCCCTCAACAGCATCCT CGAACCCTTACATCGTTAAGCAATGCCAAACCACCAGATACCCATCCCTCTGCGTCCAGTGCTTCTCCACCTTCGCCAACTCAACCTCCCACCACTCCCC ACAGCAGCTAGCCCGCATCGCCCTCACCGTAAGCCTCTACAAAGCCCGCCTCACCAGATCCTTCCTCCTCAAAGTCAACCGCAACCTCAAGGCGTTGACC AAGCCACGTCACGACCGCCAAGTAATGAACGACTGCCTCGGCCAGCTGGCCGACGGCATCCAGCAGCTCAGCCGGTCCATCCTCGAGCTCGCCCAGCTCG AGAAGAAAGGCGGTGTGGCCGTAAACGACGACGCCGTTTTGTGGCACGTGAGGAACGTGGAGACCTGGGTGAGCGCCGCCCAGACGGATGCCGACACGTG CTTGGACGAGTTCCATGGGAAGAAGATGAGTAAGCTTAGGGCTACCATTAAGGTGAGGGTTACGAATGTTGCGGAAACTGCTAGTAATGCTCTGACTTTG TTTCAGAGGTTCGTTGTTGCCAGGTTTGGCGCTCGGTTCGCCTCCAAGCGTTATCCGTGA
AA sequence Show only first row Show all	>Lus10001988 pacid=23140518 polypeptide=Lus10001988 locus=Lus10001988.g ID=Lus10001988.BGIv1.0 annot-version=v1.0 MATTTTTTHFLPLLFLILLTLAVSVNSNPSTASSNPYIVKQCQTTRYPSLCVQCFSTFANSTSHHSPQQLARIALTVSLYKARLTRSFLLKVNRNLKALT KPRHDRQVMNDCLGQLADGIQQLSRSILELAQLEKKGGVAVNDDAVLWHVRNVETWVSAAQTDADTCLDEFHGKKMSKLRATIKVRVTNVAETASNALTL FQRFVVARFGARFASKRYP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10001988 [exp]	0	1
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10012361 [exp]	2.4	0.9450
AT5G59790			Domain of unknown function (DU...		Lus10005887 [exp]	5.2	0.9386
AT3G21710			unknown protein		Lus10027176 [exp]	5.7	0.9401
AT3G25600			Calcium-binding EF-hand family...		Lus10017900 [exp]	7.2	0.9253
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	7.7	0.9469
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10019758 [exp]	10.2	0.8887
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10013782 [exp]	10.7	0.9415
AT5G54370			Late embryogenesis abundant (L...		Lus10033540 [exp]	10.7	0.9463
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10036147 [exp]	11.4	0.8814
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	14.1	0.9432

Compare expression of checked genes

Lus10001988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.