Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45260 671 / 0 Plant protein of unknown function (DUF641) (.1) AT4G34080 412 / 2e-144 Plant protein of unknown function (DUF641) (.1) AT4G33320 403 / 1e-140 Plant protein of unknown function (DUF641) (.1) AT3G14870 294 / 4e-95 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G29300 283 / 2e-91 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT1G53380 283 / 3e-91 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G60680 268 / 7e-85 Plant protein of unknown function (DUF641) (.1) AT5G58960 217 / 1e-65 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT4G36100 181 / 1e-54 Sec1/munc18-like (SM) proteins superfamily (.1) AT2G30380 178 / 1e-50 Plant protein of unknown function (DUF641) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030291 [exp] 872 / 0 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10029259 [exp] 268 / 3e-85 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10009923 [exp] 265 / 1e-84 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) Lus10024190 [exp] 265 / 3e-84 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1) Lus10008587 [exp] 263 / 1e-83 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1) Lus10007312 [exp] 262 / 6e-83 AT1G29300 433 / 2e-149 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10005424 [exp] 259 / 4e-82 AT1G29300 365 / 3e-123 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 257 / 1e-80 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10015232 [exp] 251 / 5e-79 AT1G29300 377 / 7e-128 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G145900 [exp] 749 / 0 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 490 / 2e-174 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.011G108000 [exp] 327 / 2e-108 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.001G387700 [exp] 321 / 6e-106 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.013G155400 [exp] 292 / 5e-95 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.004G061600 [exp] 286 / 2e-92 AT1G29300 485 / 6e-170 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.011G071000 [exp] 282 / 9e-91 AT1G29300 483 / 3e-169 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 278 / 4e-89 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.002G145000 [exp] 257 / 9e-81 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.019G128300 [exp] 237 / 8e-74 AT2G45260 241 / 2e-75 Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [flax] [poplar] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Lus10001989 pacid=23140510 polypeptide=Lus10001989 locus=Lus10001989.g ID=Lus10001989.BGIv1.0 annot-version=v1.0 ATGCTACCCACTGGTTCGAAGGATAATCAACTCCGTGAGAACAATACCCAAAAGGTCCACCCCCAACCGATGGAAGAGTCCATGCATCCGAATCCAGAAG CCCTTGAAACATTGATATCCAGAATTTTCCAAAACATATCCTCTCTCAAGTCCGCTTACATTCAACTCCAAGCTGCTCATACTCCTTATGACCCCGATAA GATCCAAGCTGCCGATAAACTCGTAATCACCGAGCTGAAGAACCTCTCCGAACTGAAGCATTACTACAGAGAGAACAATCCCAGGCCGGTGAGTGTCTCC CCTCAGGATTCTCGCTTAGCAGTCGAAATTCAAGAACAGCAGAGCCTCTTGAAAACTTACGAGGTCATGGTCAAGAAATTCCAGTCCGAAATCCATAATA AGGATTCCGAGATCCATCAGATGCAGCAGCAGATCGAGGAGGCGAATCAGAAAAGATCAAAATTAGAAAAGAACCTTAAGCTGAGAGGGTTATCAACGAA AGGCTCAGAAGGAGGTTCCGCAGAAGAAAATGGGTTCTTCCTCGTGGATCTAACCCCCGAGCTTTTCACTTCTGCTGTAGAAGCTGCGTATAAAGCCATT CACGATTTTTCTAAGCCGCTAGTCAACATGATGAAAGCTGCAGGGTGGGATCTCGATGCTGCAGCCGGGTCGATCGAGCCAAGTGTCGTCTATGCAAGGA GAGCGCACAAGAAGTATGCTTTCGAGTCTCATATATGTCAAAAGATGTTCAGTGGCTTTCAGCAAGAGAATTTTGGTATTAATGTCGATGATATAACTGT CTCAAAGGAGAGTTTCTTCCACCAGTATCTTGCACTAAGGGAGATGGATCCGTTGGATGCTGTAGGTCAGAATCCGGATTCCATATTTGGGAGATTCTGC AGGAGCAAGTATCTGGTGGTTGTTCATCCAAAGATGGAAGCTTCCTTCTTCGGGAATCTTGATCAACGAAACTACGTGATGGGCGGAGGGCATCCGAGGA CTTCGTTCTACCTAGCGTTCTTAAAGCTTGCCAAGTCGATCTGGCTTCTGCACCGGCTGGCCTATTCCTTTGACCCGAACGTGAAGGTGTTTCAAGTCAA GCGAGGGAGCGAGTTTACCGAGGTTTACATGGAGAGTGTGGTGAAGAACTTGATACTGGATGAGAGCAACCCGAAACCGAAAGTCGGGTTGATGGTCATG CCCGGGTTTTGGGTCGGGGGTAGTGTGATTCAGAGCCGTGTGTATCTCACTGGCATGAAGGTCGCTGAATGA
AA sequence Show only first row Show all	>Lus10001989 pacid=23140510 polypeptide=Lus10001989 locus=Lus10001989.g ID=Lus10001989.BGIv1.0 annot-version=v1.0 MLPTGSKDNQLRENNTQKVHPQPMEESMHPNPEALETLISRIFQNISSLKSAYIQLQAAHTPYDPDKIQAADKLVITELKNLSELKHYYRENNPRPVSVS PQDSRLAVEIQEQQSLLKTYEVMVKKFQSEIHNKDSEIHQMQQQIEEANQKRSKLEKNLKLRGLSTKGSEGGSAEENGFFLVDLTPELFTSAVEAAYKAI HDFSKPLVNMMKAAGWDLDAAAGSIEPSVVYARRAHKKYAFESHICQKMFSGFQQENFGINVDDITVSKESFFHQYLALREMDPLDAVGQNPDSIFGRFC RSKYLVVVHPKMEASFFGNLDQRNYVMGGGHPRTSFYLAFLKLAKSIWLLHRLAYSFDPNVKVFQVKRGSEFTEVYMESVVKNLILDESNPKPKVGLMVM PGFWVGGSVIQSRVYLTGMKVAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45260			Plant protein of unknown funct...		Lus10001989 [exp]	0	1
AT3G14240			Subtilase family protein (.1)		Lus10037449 [exp]	1.7	0.9009
AT1G27190			Leucine-rich repeat protein ki...		Lus10030811 [exp]	4.0	0.8812
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10027290 [exp]	6.0	0.8939
AT1G12380			unknown protein		Lus10024556 [exp]	7.5	0.8525
AT1G11360			Adenine nucleotide alpha hydro...		Lus10038561 [exp]	8.7	0.8732
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10011065 [exp]	11.0	0.8220
AT1G07310			Calcium-dependent lipid-bindin...		Lus10040692 [exp]	11.0	0.8658
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	11.1	0.8831
AT5G24240			Phosphatidylinositol 3- and 4-...		Lus10018104 [exp]	13.3	0.8294
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	13.7	0.8612

Compare expression of checked genes

Lus10001989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.