Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001992 pacid=23144307 polypeptide=Lus10001992 locus=Lus10001992.g ID=Lus10001992.BGIv1.0 annot-version=v1.0 ATGTCCAATTACTCAGAAAACTTCATGAACGTCTTTATGTCCGCAGATGAGGCATGCTTCTTCAAAGAGAGAAATTGGGATCATGAGAGAACTAACAAGT TTACACCGTCGCTTAAACCAGAAGTTGATTGGCATGCTTCTTCCAAACAAGTCGGAAATTTCCCCGCAAGCATGAAAAAGCTGATACTTGTCTGGAAAGT GCTGGACACAAGAAAAGTTCCCGACATACTTGCCAGTGCTATTTTCCTCTCAATAGTCTGCCGGTACGCTTCTTATAAGAAGGTTAATGCTGAGGGCTTT ACTGTAGATAGTTGA
AA sequence Show only first row Show all	>Lus10001992 pacid=23144307 polypeptide=Lus10001992 locus=Lus10001992.g ID=Lus10001992.BGIv1.0 annot-version=v1.0 MSNYSENFMNVFMSADEACFFKERNWDHERTNKFTPSLKPEVDWHASSKQVGNFPASMKKLILVWKVLDTRKVPDILASAIFLSIVCRYASYKKVNAEGF TVDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001992 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10031590 [exp]	1.0	0.8156
AT1G69550			disease resistance protein (TI...		Lus10024150 [exp]	2.8	0.7236
AT2G44525			Protein of unknown function (D...		Lus10007558 [exp]	4.0	0.6812
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10040457 [exp]	8.1	0.7911
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10036746 [exp]	10.4	0.7706
AT2G32750			Exostosin family protein (.1)		Lus10010677 [exp]	10.6	0.7241
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	13.1	0.7634
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10003617 [exp]	18.0	0.6896
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	20.0	0.6986
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10040909 [exp]	22.0	0.7243

Compare expression of checked genes

Lus10001992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.