Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000292 [exp] 160 / 2e-51 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001993 pacid=23144308 polypeptide=Lus10001993 locus=Lus10001993.g ID=Lus10001993.BGIv1.0 annot-version=v1.0 ATGAGACCACCACCAACTTGTTCTTTTTCTTCAGCTTCTTCATCCATTCTTACTAGTCCAGTATCCCTCCAAAGATTTCTTCCAAGCTCTATCATCAAGA GATACAACAGCGGAGGGAGGAAAGACGGGAATCAAGAAGAAGAAGAAGAAAACGTAATAGCAGGAGATCATGTAAGGGCGCCATCTCTGGCAGATGAGTT TAGGAGACTGGAGGCACAGAAATTGAAGGAAGATCACCATCTCCATGAAATTACTGATCGTGGTATAGCGAGTCAGACAGCGGGGAAAGCAATGGACGGA TTAGATGATGCATTGGATAAGGAGGACAATAACCTGGAACCGGTGAAGAATAGATACAAGGAGCAGGAACCGGGTGCTGATTATCGGCGGAGAGGGACCA ATACTAATCGTTACTAG
AA sequence Show only first row Show all	>Lus10001993 pacid=23144308 polypeptide=Lus10001993 locus=Lus10001993.g ID=Lus10001993.BGIv1.0 annot-version=v1.0 MRPPPTCSFSSASSSILTSPVSLQRFLPSSIIKRYNSGGRKDGNQEEEEENVIAGDHVRAPSLADEFRRLEAQKLKEDHHLHEITDRGIASQTAGKAMDG LDDALDKEDNNLEPVKNRYKEQEPGADYRRRGTNTNRY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001993 [exp]	0	1
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10013773 [exp]	10.0	0.8587
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012320 [exp]	15.7	0.8513
AT4G07950			DNA-directed RNA polymerase, s...		Lus10030228 [exp]	19.7	0.8354
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040217 [exp]	36.4	0.8212
					Lus10038309 [exp]	41.3	0.8139
AT3G62940			Cysteine proteinases superfami...		Lus10005939 [exp]	48.2	0.7925
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10006542 [exp]	48.9	0.7987
AT4G17620			glycine-rich protein (.1.2.3)		Lus10030023 [exp]	95.3	0.7705
AT5G53900			Serine/threonine-protein kinas...		Lus10005549 [exp]	97.3	0.7780
AT3G03773			HSP20-like chaperones superfam...		Lus10002623 [exp]	102.4	0.7956

Compare expression of checked genes

Lus10001993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.