Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07930 213 / 5e-61 DNA glycosylase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G189400 [exp] 214 / 1e-63 AT3G07930 215 / 3e-67 DNA glycosylase superfamily protein (.1.2.3) Potri.014G187300 [exp] 213 / 3e-63 AT3G07930 214 / 6e-67 DNA glycosylase superfamily protein (.1.2.3) Potri.014G187000 [exp] 208 / 6e-62 AT3G07930 213 / 1e-66 DNA glycosylase superfamily protein (.1.2.3) Potri.012G037700 [exp] 191 / 1e-55 AT3G07930 215 / 9e-68 DNA glycosylase superfamily protein (.1.2.3) Potri.014G187766 [exp] 185 / 2e-53 AT3G07930 186 / 3e-56 DNA glycosylase superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001994 pacid=23141622 polypeptide=Lus10001994 locus=Lus10001994.g ID=Lus10001994.BGIv1.0 annot-version=v1.0 ATGAAGGGTGCACATGATGACGGAGAATGTGGAGTGACTCTGCCTTCTTTTAACACTAATCAAGTATGCTATGAGAAAGACGAGTTGAAGGAGAACAGTG AAGGGGTGGATGGACGAAGTGAAGAAAACAGAGTTCTATCTCCGTATTTTAGCAAAGTGAATGATGATGAGAAAGAGGGCGTTGGGGTCAAGAGAAAGGT GGTACTTGGACTACGTGCTGAAACAAGAGTGGTATCCCCTTATTTTCAGAAAAGAAGTGATGCTGCAATAAGTTACGGTGAAGAAAAGAGAGTTATATCT CCTTATTTTAGCAAAGTGAACGACGATGCTGAGAAAGAGAGCGTTGGGGTGAAGAGAAAGGTGGTACTAGGACTACGTGCTGAAACAAGAGTGGTATCCC CTTATTTTCAGAAAAGAAGTGATGCTGCAATAAGTTACGGTGAAGAAAAGAGAGTTATATCTCCTTATTTTAGCAAAGTGAACGACGATGCTGAGAAAGA GAGTGTTGGGGTGAAGAGAAAGGTGGTACTTGGACTACGTGCTGAAACAAGAGTGGTATCCCCTTATTTTCAGAAAAGAAGTGATGCTGCAATAAGTTAC GGTGAAGAAAAGAGAGTTATATCTCCTTATTTTAGCAAAGTGAACGACGATGCTGAGAAAGAGAGCGTTGGGGTGAAGAGAAAGGTGGTACTAGGACTAC GTGCTGAAACAAGAGTGGTATCCCCTTATTTTCAGAAAAGAAGTGATGCTGCAATAAGTTACGGTGAAGAAAAGAGAGTTATATCTCCTTATTTTAGCAA AGTGAACGACGATGCTGAGAAAGAGAGTGTTGGGGTGAAGAGAAAGGTGGTACTTGGACTACGTGCTGAAGCAAGAGTGGTATCCCCTTATTTTCAGAAA AGAGGTGATGCTGAAAGAAGTTTCGGAAAAGAGGGCAACGGGAGAAAGATAAAAGGCAGAACAGAGGATGCAGAAAGTATAGCGACATTCTCTAATGTTA CGAATAGTAATCAAGTTTGGTATGATGTAGAAGACAGTAAGAAGAATAGTGGAGAGGGTGTTGTACAAGATTCTGAAACAAAAGAGACTAGTGGGAGGGA GAAGAAGATGGTGGATGGAGAAATTGCTGAAAAGAGAGTGACATCTCATTATTTCGGGAAAGTAAGAGAGACCGAGGGGAGTACTTGCCAGAAAGGGGGG ATGGAGTCAAATACAAAGAGAAGAAAGGACGAACAAAAAAGAGAAACTAGAGTTACAGCACCTTATTTTAGCAAACCAAATGATGTAGATATCCGAGACA TGGAAGATAAGATGGAGAGGAAGAACGAAAAGAGAAATAGAGGAAATATAGATGAGGAGAATATTGAAATGATGGAAACAAAGAGGCAATCGAAGCAAGT AGTATTGGATGGCTCTCCTGAACGCATAATGTCGAAGAACAAGGCGCCACCAGAACAAAATTGTTTTCAAGAAGGTGCACCGACTGTTGCTTTGAGAAAT TTGGAAACTATGTTCTCCCAATTTGCATATAAAGCCAATGGCCATGAGAAGAGTCTCAAAGCTGGAGGTAATGGTGTTTCTTCACGTATTAGTAAGGAGC CACATGAATCTAAAGGAAAGGAGGATCGCAATGTTTCGAAATCGACCAGAAGACAGTCAAATGGTAAAGGAAAACAAAAAGAAGAAGTAAAAGCCCCAAA ACCACGTAGACGAGTACAATCAGCAGTTGATAATGTTCCCGCTTCCTTTGAAAGGGTATCCAAATCTGCGGTATCAAAAGGTAGTAGTTCGACTAATCGT AGAAGTGTGAAATCAATGATAAAGAAGAAAAAAAGGAAGAATGTTCTTTCTGCTTCTGAGAAACGTAATGAGGCGTATAGAAGGAAAAGTCCAGATAACA TGTGGAAGCCACCAAGATCTGTGCATGGACTACTGCAAGAAGCGCATGCGCATGACCCTTGGAGAGTACTGGTGATATGTATGCTCTTAAATGTAACTAC TAGGGATCAGGTTAAAGGAGTGTTGGATGACTTCTTCATGCTGTGTCCTGATGCGAAGACAGCCACAGAAGTTGATGTGTTGGAACTTCAGAAATTGATA AAGGGTCTGGGTCTATCCCGAATTAGGTCTGCAACGATAAAACGTTTCTCTGAAATGTACTTGTGGGAGGACTGGACTTACGTGACTCATCTTCATGGTG TTGGAAAATATGCGGCAGATGCATATGCAATATTCTGTACAGGTATGTGGAAGCATGTGAAACCTTGTGATCACAAGCTAAATGACTACTGGAATTTCCT TCGTCAAGGTGGAGCGGATTGCCTGTGA
AA sequence Show only first row Show all	>Lus10001994 pacid=23141622 polypeptide=Lus10001994 locus=Lus10001994.g ID=Lus10001994.BGIv1.0 annot-version=v1.0 MKGAHDDGECGVTLPSFNTNQVCYEKDELKENSEGVDGRSEENRVLSPYFSKVNDDEKEGVGVKRKVVLGLRAETRVVSPYFQKRSDAAISYGEEKRVIS PYFSKVNDDAEKESVGVKRKVVLGLRAETRVVSPYFQKRSDAAISYGEEKRVISPYFSKVNDDAEKESVGVKRKVVLGLRAETRVVSPYFQKRSDAAISY GEEKRVISPYFSKVNDDAEKESVGVKRKVVLGLRAETRVVSPYFQKRSDAAISYGEEKRVISPYFSKVNDDAEKESVGVKRKVVLGLRAEARVVSPYFQK RGDAERSFGKEGNGRKIKGRTEDAESIATFSNVTNSNQVWYDVEDSKKNSGEGVVQDSETKETSGREKKMVDGEIAEKRVTSHYFGKVRETEGSTCQKGG MESNTKRRKDEQKRETRVTAPYFSKPNDVDIRDMEDKMERKNEKRNRGNIDEENIEMMETKRQSKQVVLDGSPERIMSKNKAPPEQNCFQEGAPTVALRN LETMFSQFAYKANGHEKSLKAGGNGVSSRISKEPHESKGKEDRNVSKSTRRQSNGKGKQKEEVKAPKPRRRVQSAVDNVPASFERVSKSAVSKGSSSTNR RSVKSMIKKKKRKNVLSASEKRNEAYRRKSPDNMWKPPRSVHGLLQEAHAHDPWRVLVICMLLNVTTRDQVKGVLDDFFMLCPDAKTATEVDVLELQKLI KGLGLSRIRSATIKRFSEMYLWEDWTYVTHLHGVGKYAADAYAIFCTGMWKHVKPCDHKLNDYWNFLRQGGADCL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07930			DNA glycosylase superfamily pr...		Lus10001994 [exp]	0	1
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10023155 [exp]	1.0	0.8681
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	4.7	0.8217
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10038683 [exp]	8.1	0.7870
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032560 [exp]	8.1	0.7890
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10012902 [exp]	8.5	0.7738
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	9.9	0.7941
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10012753 [exp]	10.6	0.7472
AT3G02120			hydroxyproline-rich glycoprote...		Lus10032981 [exp]	11.2	0.7486
AT5G19090			Heavy metal transport/detoxifi...		Lus10004465 [exp]	11.6	0.6903
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10000697 [exp]	13.1	0.7355

Compare expression of checked genes

Lus10001994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.