Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13690 647 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G55200 590 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G56790 563 / 0 Protein kinase superfamily protein (.1) AT5G38560 323 / 3e-99 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G24550 322 / 6e-99 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G68690 322 / 1e-98 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G26150 319 / 6e-97 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT1G23540 318 / 6e-97 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 318 / 9e-97 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT3G24540 311 / 9e-97 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006148 [exp] 761 / 0 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 504 / 9e-169 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009559 [exp] 393 / 2e-123 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040097 [exp] 389 / 8e-123 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10030950 [exp] 384 / 6e-121 AT3G13690 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 339 / 2e-106 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10011098 [exp] 325 / 5e-100 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 320 / 6e-98 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10003066 [exp] 319 / 4e-97 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G034900 [exp] 669 / 0 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G200000 [exp] 658 / 0 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 546 / 0 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G038300 [exp] 409 / 2e-131 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G130300 [exp] 402 / 9e-129 AT1G55200 535 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G185500 [exp] 351 / 9e-111 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.003G189850 [exp] 328 / 1e-100 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.001G035900 [exp] 325 / 7e-100 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1) Potri.004G153600 [exp] 320 / 4e-98 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 320 / 3e-97 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10001996 pacid=23141621 polypeptide=Lus10001996 locus=Lus10001996.g ID=Lus10001996.BGIv1.0 annot-version=v1.0 ATGGCCGAGAAGGTAGTGGTTGCAGTGAAGGCCTCTAAGGAGATTCCTAAGACTGCTTTAGTTTGGGCTTTAACTCATGTTGTGCAGCCAGGGGACTGCA TTACCCTGCTTGTTGTTGTACCTTCCCAGATTTCAGGTCGCAAGTTTTGGGGTTTCCCAAGATTTGCTGGGGATTGTGCTAGTGGTCACAAGAAGTCTCA ACTGGGAGCAACCTCGGAGCAGAAGAGTGACATTACAGATTCATGCTCGCAAATGATACTTCAGCTCCACGATGTTTATGATCCTAACAAAATCAATGTG AAGATAAAGATTGTATCTGGTTCCCCTTGTGGAGCTGTAGCTGTGGAGGCTAAGAAAGCTCAAGCGAATTGGGTTGTGCTCGACAAACATCTAAAACATG AGGAGAAGCGATGCATGGAAGAACTACAGTGTAACATAGTAATCATGAAGCGATCTCAACCAAAAGTTCTCCGCTTGAATTTGATAGGATCAGCCAAGGA CGCTGAAGTCATTGGTCCTTCTTCAAAAGTGGATGAAGCTTCTGAGAATCAGTTCAAGAAAGATAACAGGTCTACTACAGATTCAATTCCTGGCCCCGTT GTGACTCCAACTAGTAGTCCGGAGTTAGGGACTCCCTTTACAGCTACTGAAGCTGGAACGTCTTCAGTGTCAAGTGATCCAGGAACTTCACCATTTTTCA TCTCAGGATCTAATGGCGACTTGAAGAAAGAGGAATCTTTGGCTGTTAAGGATACGAGAGAACTTGATGACTCTGGTTCCGAGACAGATTGTGATCAGTT ATCTACAACATCTGCAAGTATGAGGTTTGAGCCTTGGATAGGAGAGTTTATTACTTCTCAGGCCCATGCCTCACGACGCATGGAAAAGCGGTCTCTACTA AATGCTGGTAGATCACAAGCATCAAGGAACCAGACCTCGTTTAATAAGGCCTCCAATGTTAACAGACAAACTGGTTTTGTGATGTCCAACTATCGGGCTG ATTCAGATTTAGGTACAGAAAAGGCGGACGTATATTCATTTGGTGTGGTGTTGGTTGAGCTAGTGACAGGCCGCAAGGCGGTAGATCTTAACCGCCCCAA GGGCCAGCAATGTCTCACTGAATGGGCACGTCCATTGTTGGAAGAGTATGCTGTTGATGAACTGATAGACCCTCGACTGGGAAATAGATTCTCTGAGCAA GAAGTCTACTGCATGCTTCAAGCTGCATCATTATGCATACGACGGGATCCTCAATCTAGGCCTCGCATGTCACAGGTGAATATAGAAACAATCCTATCAT CACCTTTAAGACTTCCAGTCTGGTGTGGTGCAAAAGCCAAAACTAACACAGAAAATATGTATCTTGTTTGTGGAAAAAAGGTTCTGCGCATACTACCTCC TTTGTGTTCAATATGTCAGCACAAAGCACCTGTTTTTGGAAAGCCCCCAAGGTGGTTCAGTTATGCTGAGTTAGAGCTTGCTACTGGTGGGTTTTCACAA GCTAATTTCTTAGCAGAAGGTGGATTTGGATCTGTTCACAGAGGTGTGCTGCCAGATGGCCAGGCAGTTGCTGTTAAGCAGCACAAATTGGCTAGTACGC AAGGGGATCATGAGTTTTGCTCGGAAGTGGAGGTGCTTAGCTGTGCTCAGCATCGCAATGTTGTCATGTTGATTGGGTTTTGTATTGAAGATAAAAGAAG ATTATTGGTCTATGAGTATATATGCAACGGTTCCTTGGATTCTTACCTTTACGGGAATCAGCGAGAGCCATTGGAATGGCCTGCTCGCGAGAAGATTGCA GTAGGTGCTGCTCGGGGGTTGCGTTATCTGCATGAAGAGTGCAGAGTAGGCTGTATTGTCCACCGTGATATGCGGCCCAACAATATTCTAATAACACATG ATTTTGAACCATTGGTTGGAGATTTTGGCCTGGCTAGGTGGCAGCCTGATGGCGACACTGGCGTTGAAACAAGAGTTATTGGAACATTTGGGTATTTGGC ACCCGAATATGCTCAGAGTGGTCAAATAACAGAAAAGGCGGACGTATATTCATTTGGTGTGGTGTTGGTTGAGCTAGTGACAGGCCGCAAGGCGGTAGAT CTTAACCGCCCCAAGGGCCAGCAATGTCTCACTGAATGGGCACGTCCATTGTTGGAAGAGTATGCTGTTGATGAACTGATAGACCCTCGACTGGGAAATA GATTCTCTGAGCAAGAAGTCTACTGCATGCTTCAAGCTGCATCATTATGCATACGACGGGATCCTCAATCTAGGCCTCGCATGTCACAGGTTCTGCGCAT ACTAGAAGGCGACATGCTGATGGATATGAACTACATGTCAACACCTGGATCTGACATTGGAAATCGGAGTGGACGGATGCTGCAAGAACAGAGGCAGCAA CAACATCACAGCGGACCATTAGGGAGTGAGGCATTTGAAGGGTTCAGCGCCAATAAGGTATCTGTTGAAACACAAAGGGAAACGACCCGAAGAATGCCAT TTGATAATGGGCTTTAG
AA sequence Show only first row Show all	>Lus10001996 pacid=23141621 polypeptide=Lus10001996 locus=Lus10001996.g ID=Lus10001996.BGIv1.0 annot-version=v1.0 MAEKVVVAVKASKEIPKTALVWALTHVVQPGDCITLLVVVPSQISGRKFWGFPRFAGDCASGHKKSQLGATSEQKSDITDSCSQMILQLHDVYDPNKINV KIKIVSGSPCGAVAVEAKKAQANWVVLDKHLKHEEKRCMEELQCNIVIMKRSQPKVLRLNLIGSAKDAEVIGPSSKVDEASENQFKKDNRSTTDSIPGPV VTPTSSPELGTPFTATEAGTSSVSSDPGTSPFFISGSNGDLKKEESLAVKDTRELDDSGSETDCDQLSTTSASMRFEPWIGEFITSQAHASRRMEKRSLL NAGRSQASRNQTSFNKASNVNRQTGFVMSNYRADSDLGTEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAVDELIDPRLGNRFSEQ EVYCMLQAASLCIRRDPQSRPRMSQVNIETILSSPLRLPVWCGAKAKTNTENMYLVCGKKVLRILPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQ ANFLAEGGFGSVHRGVLPDGQAVAVKQHKLASTQGDHEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSYLYGNQREPLEWPAREKIA VGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVD LNRPKGQQCLTEWARPLLEEYAVDELIDPRLGNRFSEQEVYCMLQAASLCIRRDPQSRPRMSQVLRILEGDMLMDMNYMSTPGSDIGNRSGRMLQEQRQQ QHHSGPLGSEAFEGFSANKVSVETQRETTRRMPFDNGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13690			Protein kinase protein with ad...		Lus10001996 [exp]	0	1
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	1.0	0.8934
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017149 [exp]	2.4	0.8851
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	2.8	0.8700
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10001807 [exp]	3.7	0.8342
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10021037 [exp]	5.7	0.8591
AT2G25870			haloacid dehalogenase-like hyd...		Lus10005489 [exp]	6.5	0.8806
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10023776 [exp]	8.1	0.8276
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10012689 [exp]	11.3	0.8315
AT4G10000			Thioredoxin family protein (.1...		Lus10009466 [exp]	11.7	0.8276
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Lus10032769 [exp]	12.0	0.8299

Compare expression of checked genes

Lus10001996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.