Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63470 155 / 2e-44 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63480 128 / 2e-34 AT-hook AT hook motif DNA-binding family protein (.1) AT2G45850 124 / 5e-33 AT-hook AT hook motif DNA-binding family protein (.1.2) AT3G61310 107 / 1e-26 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 107 / 2e-26 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G12080 89 / 9e-20 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G17950 85 / 3e-18 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 79 / 3e-16 AT-hook AT hook motif DNA-binding family protein (.1) AT5G46640 70 / 3e-13 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 69 / 6e-13 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008533 [exp] 346 / 4e-119 AT1G63470 292 / 7e-97 AT hook motif DNA-binding family protein (.1) Lus10008535 [exp] 343 / 9e-118 AT1G63470 296 / 3e-98 AT hook motif DNA-binding family protein (.1) Lus10008497 [exp] 308 / 9e-105 AT1G63470 225 / 4e-71 AT hook motif DNA-binding family protein (.1) Lus10030381 [exp] 92 / 5e-21 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10037858 [exp] 91 / 1e-20 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10040085 [exp] 91 / 2e-20 AT4G17950 241 / 9e-76 AT hook motif DNA-binding family protein (.1) Lus10030962 [exp] 91 / 3e-20 AT4G17950 235 / 2e-73 AT hook motif DNA-binding family protein (.1) Lus10011067 [exp] 87 / 5e-19 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10004318 [exp] 78 / 4e-16 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104900 [exp] 268 / 2e-88 AT1G63470 281 / 1e-92 AT hook motif DNA-binding family protein (.1) Potri.003G126500 [exp] 253 / 1e-82 AT1G63470 296 / 2e-98 AT hook motif DNA-binding family protein (.1) Potri.014G082100 [exp] 149 / 2e-42 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G158200 [exp] 145 / 5e-41 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.001G143500 [exp] 107 / 2e-26 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.003G090900 [exp] 104 / 2e-25 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.002G005000 [exp] 97 / 6e-23 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.002G148600 [exp] 88 / 1e-19 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.012G129500 [exp] 87 / 2e-19 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.014G070000 [exp] 85 / 1e-18 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain CL0615 [flax] [poplar] PF02178 [flax] [poplar] AT_hook AT hook motif
Representative CDS sequence Show only first row Show all	>Lus10001997 pacid=23171886 polypeptide=Lus10001997 locus=Lus10001997.g ID=Lus10001997.BGIv1.0 annot-version=v1.0 ATGGATGGAAGGGAAGCTATGGCATTGTCTAGTGGGTCGAATCCGTATTTCATTCACAGGGGACCCGATTTCGGTGGGTCTGGGTACGGTACACAAAGTG GCGCATTGCATCCCCCGCCACAGTTTAGAACTTCCTCAACCCAGAACTTTCAGATTCATAACAATGGAATGCCTGGTTCATCTGCCCCTTCATTCTCCAT AGAGCACTCTAATATGAATTCTGGTCATGGTCATCATGGACATGAACATGGGGATGGCATTGATACGGGTGCTCCACCTGAAATGTCTGTGAGTGAGCAG CCTGTGAAGAAGAAGAGAGGGAGGCCACGGAAATATGCCCCGGATGGGCAGCAAGTCTCTCTGGGGTTGTCCCCCATGCTGATAAAGCCTAAACAATCTT CAGAGCAAGATCCATTAAGCCCCTCTAAGCGTAAAGGACGCCCACCTGGCACAGGGAGGAAACAACGACTAGCCAATCTAGGTTATGTTGCGATGGTTGG CAACGTTGCGATGTCCATCTTGGTACAGGGACGTTTTCAGATACTATGCTTGTCGGGTTCTTACTTGGTCGCCGAAGATGGAGGACCCCGCGATAGAACT GGCGGGATAAGCGCCTCTCTTTCGACTCCTGATGGCCAAGTCATTGGTGGTGCTATTGGTATGCTTACTGCTGCAACTTTAGTCCAGGTGGTGATCTGCA GCTTTGTATATGGTGGTACTAAGAAGCCGGAGAGACCAGTTGGCCGTCCCAAGAGCGATAAAAGCCAACGCAGCAGCGAGAAATTAGCTACTCCTGCTAG TGCTCCTCCAGCTACAACGCATGAGCATCATTACACACCTTCTCCAATGGGTGTGTGGCCAGGTTCACGGTCAGTCAATCTGAGAAATCCCCACATGGAC ATTGACTTGACTCAAGGATGA
AA sequence Show only first row Show all	>Lus10001997 pacid=23171886 polypeptide=Lus10001997 locus=Lus10001997.g ID=Lus10001997.BGIv1.0 annot-version=v1.0 MDGREAMALSSGSNPYFIHRGPDFGGSGYGTQSGALHPPPQFRTSSTQNFQIHNNGMPGSSAPSFSIEHSNMNSGHGHHGHEHGDGIDTGAPPEMSVSEQ PVKKKRGRPRKYAPDGQQVSLGLSPMLIKPKQSSEQDPLSPSKRKGRPPGTGRKQRLANLGYVAMVGNVAMSILVQGRFQILCLSGSYLVAEDGGPRDRT GGISASLSTPDGQVIGGAIGMLTAATLVQVVICSFVYGGTKKPERPVGRPKSDKSQRSSEKLATPASAPPATTHEHHYTPSPMGVWPGSRSVNLRNPHMD IDLTQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10001997 [exp]	0	1
AT3G13620			Amino acid permease family pro...		Lus10010512 [exp]	7.7	0.8804
AT5G65630		GTE7	global transcription factor gr...		Lus10039630 [exp]	9.9	0.8675
AT3G55930			Pre-mRNA-splicing factor 3 (.1...		Lus10031931 [exp]	11.4	0.8833
					Lus10007141 [exp]	11.5	0.8696
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	16.0	0.8326
AT2G26520			unknown protein		Lus10021765 [exp]	18.6	0.8781
AT3G58530			RNI-like superfamily protein (...		Lus10012294 [exp]	24.7	0.8775
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10014546 [exp]	25.9	0.8259
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10039650 [exp]	30.0	0.8582
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10002824 [exp]	31.3	0.7631

Compare expression of checked genes

Lus10001997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.