Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63500 801 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 782 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 752 / 0 BSK3 BR-signaling kinase 3 (.1) AT5G59010 707 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 682 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 647 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT4G35230 597 / 0 BSK1 BR-signaling kinase 1 (.1) AT5G46570 577 / 0 BSK2 BR-signaling kinase 2 (.1) AT3G09240 564 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G01060 540 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008494 [exp] 882 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008530 [exp] 881 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10030383 [exp] 725 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10027743 [exp] 724 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10037856 [exp] 721 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10035550 [exp] 721 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10040719 [exp] 712 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10018849 [exp] 689 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1) Lus10016454 [exp] 684 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104700 [exp] 827 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.003G126700 [exp] 820 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.014G082400 [exp] 785 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.002G158400 [exp] 771 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.006G093900 [exp] 739 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 731 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G246400 [exp] 713 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 706 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G142800 [exp] 601 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.004G182800 [exp] 600 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10001998 pacid=23171883 polypeptide=Lus10001998 locus=Lus10001998.g ID=Lus10001998.BGIv1.0 annot-version=v1.0 ATGGGCTGCCGATGTTCAAAACTCTCAGAATGTTGTTGCAATTCAGAATATAATCAACCTGTTGCTGGGAACCACAAAGAAGAAGATGAGGAGAATGGTG AAGCTGATGAGGTGCCTGCATTTCGAGAATTCCCGGTGGAGACAATCAGGATGGCAACATCTGGTTTTGCTGTCGAGAATATAGTTTCTGAACATGGAGA GAAAGCTCCAAATGTTGTCTACAAGGGGAAGCTTGACAATCAGATAAGGGTTGCTGTAAAACGCTTCAACAGATCGGCCTGGCCGGATTCTAGACAGTTT TTGGAAGAAGCAAGAGCTGTTGGACAGCTCCGAAGTCAAAGGCTGGTTAACTTACTTGGTTGTTGCTGCGAGGGAGAGGAGAGGCTTCTTATTGCTGAAT TTATGCCCAATGATACCCTAGCAAAGCACCTATTTCATTGGGAGACACAACCAATGAAATGGGCAATGCGACTCCGTGTGGCTTTATATATAGCGCAGGC CCTGGAATATTGTACTAGCAAAGGTCGTGCTCTGTATCATGATCTGAATGCTTATAGAATTGTTTTTGATGATGAAGCAAATCCTCGACTATCATGCTTT GGTATGATGAAGAACAGTAGAGACGGGAAAAGTTACAGTACAAACCTAGCGTTCACTCCTCCTGAGTATCTAAGAACAGGGAGAGTTACACCAGAAAGTG TAATGTATAGCTTTGGTACCCTTTTGCTTGACCTTCTCAGCGGAAAGCATATTCCTCCAAGCCATGCACTGGACTTAATACGAGACCGGAACATTGAAAC GCTCACAGATTCTTGTTTGGAAGGCCAGTTTACCAACGATGATGGAACTGAGTTAGTGAGGTTAGCTTCTCGTTGTTTACAGTTTGAGCCCCGGGAGCGG CCAAGTCCTAAATCATTAGTGACTGCGTTGATTCCTCTTCAGAAGGAAACTGAGGGCATTGTTCTGCAGGTCCCTTCTCATGTATTGATGGGTGTACCCG ATGTTGCCGCAGCTGTACCTTTGACACCCCTTGGTGAGGCTTGCTTAAGGAATGATTTGACCGCAGTACACGAGATCTTAGAGAAGATTGGGTATAAAGA TGATGAGGGTGCTGCTGAGCTCTCGTTCCAAATGTGGACCAACCAAATCCAGGAAACACTAGACTCAAAGAAAAAGGGTGATGTTTCTTTCCGGCACAAG GACTTCAAAGCTTCCATTGAGTGCTACTCCCAGTTCATAGAAGTAGGGACAGTGGTTTCACCGACGGTGTATGCACGCAGAAGTCTGTCTTACCTGATGA GCGACATGCCGCAGGAAGCCCTGAACGATGCAATTCAAGCTCAAGTAATATCACCAGTTTGGCATATTGCGTCTTACTTACAAGCCTGCGCTCTTTTAGC TCTAGGAAAAGAGGCTGAAGCACATGCAGCTTTGAAAGAAGGATCAGCCCTTGAAAGTGAAAAGACGAAAACGTAA
AA sequence Show only first row Show all	>Lus10001998 pacid=23171883 polypeptide=Lus10001998 locus=Lus10001998.g ID=Lus10001998.BGIv1.0 annot-version=v1.0 MGCRCSKLSECCCNSEYNQPVAGNHKEEDEENGEADEVPAFREFPVETIRMATSGFAVENIVSEHGEKAPNVVYKGKLDNQIRVAVKRFNRSAWPDSRQF LEEARAVGQLRSQRLVNLLGCCCEGEERLLIAEFMPNDTLAKHLFHWETQPMKWAMRLRVALYIAQALEYCTSKGRALYHDLNAYRIVFDDEANPRLSCF GMMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNIETLTDSCLEGQFTNDDGTELVRLASRCLQFEPRER PSPKSLVTALIPLQKETEGIVLQVPSHVLMGVPDVAAAVPLTPLGEACLRNDLTAVHEILEKIGYKDDEGAAELSFQMWTNQIQETLDSKKKGDVSFRHK DFKASIECYSQFIEVGTVVSPTVYARRSLSYLMSDMPQEALNDAIQAQVISPVWHIASYLQACALLALGKEAEAHAALKEGSALESEKTKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63500			Protein kinase protein with te...		Lus10001998 [exp]	0	1
AT4G11860			Protein of unknown function (D...		Lus10006717 [exp]	4.6	0.8393
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10027091 [exp]	8.9	0.8736
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	13.6	0.8625
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029625 [exp]	22.2	0.8240
AT4G32760			ENTH/VHS/GAT family protein (....		Lus10022140 [exp]	25.5	0.8324
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10034062 [exp]	26.6	0.8048
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10029574 [exp]	29.4	0.8101
AT1G73160			UDP-Glycosyltransferase superf...		Lus10014499 [exp]	38.1	0.8339
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	40.1	0.8104
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Lus10029876 [exp]	41.4	0.7701

Compare expression of checked genes

Lus10001998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.