Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02850 969 / 0 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 930 / 0 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT2G26650 387 / 2e-121 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G32500 340 / 9e-104 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT2G25600 337 / 2e-102 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G22200 326 / 5e-99 AKT3, AKT2/3 potassium transport 2/3 (.1) AT5G46240 282 / 4e-84 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 280 / 5e-83 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32650 266 / 1e-78 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT2G14255 67 / 2e-11 Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015687 [exp] 952 / 0 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10037694 [exp] 427 / 1e-133 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10019442 [exp] 379 / 3e-118 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 378 / 6e-118 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10043298 [exp] 378 / 9e-118 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10035498 [exp] 354 / 5e-117 AT3G02850 206 / 2e-61 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10019944 [exp] 367 / 4e-114 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10015474 [exp] 350 / 1e-107 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1) Lus10002529 [exp] 342 / 3e-104 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G043000 [exp] 1116 / 0 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.017G135400 [exp] 1016 / 0 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 991 / 0 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.018G071400 [exp] 384 / 3e-120 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G249900 [exp] 375 / 1e-116 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G031600 [exp] 371 / 5e-115 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 331 / 2e-100 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.004G132200 [exp] 298 / 4e-89 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G245000 [exp] 265 / 3e-78 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 255 / 2e-74 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0030 [flax] [poplar] PF11834 [flax] [poplar] KHA KHA, dimerisation domain of potassium ion channel CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10001999 pacid=23171879 polypeptide=Lus10001999 locus=Lus10001999.g ID=Lus10001999.BGIv1.0 annot-version=v1.0 ATGCACGGAGACGGCGGACCATCTCATCAGCCCGATAACATGGCCGGAATAGATCCCTGTGACGGTTGTGATCAGTTGGAAATAGACGACCACGGCCGTT CGTCCACGTCAGGAAAGCAGCAGGCCTGGGCCGACAAGATTATAGGGCCGTTGCTGAGAAATGAGTCCGTCGCCGGTGGTGGACGCGGCGTCGCTAGCCG GCCTCCCTTCTTCATCCGACCCGATAACCGGTGGTACAATTTGTGGGTACATTTTATACTAATTTGGGCGATCTACTCGTCATTTTTCACACCCTTGGAG TATGGGTTGTTCAGAGGTTTACCGGAGAATCTCTTCCTTCTTGATATCGCCGGCCAATTTGCATTTCTCGTCGATATCATCGTTGGCTTCTTCGTTGCCT ATCGTGACACTCACTCCTATCGTCTCGTTTATAATAGAAAGCTTATTGCTCTAAGGTACTTAAAATCGAGATTCATTGTTGACTTGTTGGGTTGTCTACC ATGGGATGCCATTTACAAGGTTTCTGGAAGGAAAGAGGGAGTGAGGTACATGTTATGGATTCGACTGAGCAGGGCAAGAAGAGTGGATGAGTTCTTCGAG AAGATGGAAAAAGACATTAGAATCAACTATCTCTTCACAAGGATTGTGAAGCTACTTGTTGTTGAGCTCTATTGCACACACACTGCTGCTTGTATATTCT ACTATTTGGCCACAACTGTACCTCCTTCCAAAGAAGGGTACACTTGGATTGGAAGCCTGCAGATGGGAGACTTCCACTACTCCAATTTCAGAGAGATTGA TCTTTGGAAGAGATACATTACTTCCCTCTACTTTGCCATCGTTACTATGGCCACCGTTGGGTATGGAGAGATACACGCCGTGAACATTAAGGAAATGATA TTTGTGATGATATATGTCTCGTTTGACATGATTCTTGGAGCCTATCTACTTGGTAACATGACTGCCTTAATCGTCAAAGGGTCTAAGACTGAGAAGTTTA GGGATCGAATGACTGATCTTATTAAGTACATGAGCAAGAACAATCTTGGGAAGGACATTAGTAATGAGATGAAGGGTCATTTGAGGTTACAATATGATCG TAGCTATACTGAGACGACCATTTTTCAAGACATTCCTGTCTCAATTCGGACCAAGATTTCACAAAAACTATATGAGCCGTATCTCAAAGAAGTTGCTCTT TTCAGGGGGTGCTCTACAACGTTCTTGAACCATATAGCTACAAAAGTTCATGAAGAGTTTTTTCTTCCTGGGGAAGTGGTTATTCAACAAGGGAATATAG TGAACCAATTATACATTGTTTGCCATGGTGAACTCGAGGAGATAGCGAAAATAGAAGAAGATTGCAATATGGTTGGGATTGATCATCTGATGCACCTCCA AACTTACAACTCATTTGGAGAGGTCTCCTTTCTCTGCAACATTGCTCAACCCCATACCATTCGAGTTCGAGACTTGTGCAAGGTGTTGCGACTAGATAAA CAATCCTTCAAAGAGATAATCGAGATGTTCGTTCCTGATGCTAGAATCATCTTGAACAACCTTCTTGAGGGCAAGGACCCCAATCTCAGGAAGACAATAT TAGAATCAGACGTGACGCTTGACATCATAAAGTCTGAATCAGAGTTGGTTACGAGGTTGAACTCTGTTGCATTCGATGGAGATTTGTACAAATTAAAACG TCTAGTTACTAGAGGAGGCCTTGATCCTAAGAGGACAGATTACAACGGAAGATCACCTTTGCATGTTGCTGCATCTAAAGGGTTTAAGGACATAACCCTT TTCCTTATCGGACAAGGACTGGAGATCAACACTTCAGATAGCTTTGGAAACACTCCTCTGCTCGAAGCTGTAAAGCACGGCCACGAAGAAGTGGCTTTTT TACTCATGAAAGAGGGAGCAACACTTGCTACCATGGAAGAAGACGGTGGCGATTTCCTTTGCAAGACCGTTGCTAGAAGAGAGTTTGATCTCTTGAGGAG AGCTTTGGCTTGTGGAGTAAACTACAATGCACCGAACTACGACGGCAGGACAGCTCTTCACGTTGCAACCTCGCAAGGGCTATGTGCATTTGCAAGCTTA CTTGTAGATGCAGGAGCTAGTGTGCTGGCCAAAGATAGGTGGGGGAATACACCCCTTGATGAAGCTCGTGTTGGAGGGGACAGTGCAATTATTGGACTAC TTAAAACTGCAAGGATCGATCAAATGAAAGAGTTATCCAACTTACCTCACGAAATTGAAGATGGAAATCAGCCAAAGAAATGCAATGTCTTCCCTTTTCA TCCAAAAGATGAGGCTAGAAGATTAGATGGTGTCACATTATGGGTTCCTCAAACTATAGAAGAGCTCATTAAAGAAGCAAGTGAGCATTTGAGGTCACAT GGTGGATCCATCTTATCTGAGAATAATTGTCGGATTGTGGATGTTACCATGATTCATAATGATCAAAATCTATATTTAGTGTAG
AA sequence Show only first row Show all	>Lus10001999 pacid=23171879 polypeptide=Lus10001999 locus=Lus10001999.g ID=Lus10001999.BGIv1.0 annot-version=v1.0 MHGDGGPSHQPDNMAGIDPCDGCDQLEIDDHGRSSTSGKQQAWADKIIGPLLRNESVAGGGRGVASRPPFFIRPDNRWYNLWVHFILIWAIYSSFFTPLE YGLFRGLPENLFLLDIAGQFAFLVDIIVGFFVAYRDTHSYRLVYNRKLIALRYLKSRFIVDLLGCLPWDAIYKVSGRKEGVRYMLWIRLSRARRVDEFFE KMEKDIRINYLFTRIVKLLVVELYCTHTAACIFYYLATTVPPSKEGYTWIGSLQMGDFHYSNFREIDLWKRYITSLYFAIVTMATVGYGEIHAVNIKEMI FVMIYVSFDMILGAYLLGNMTALIVKGSKTEKFRDRMTDLIKYMSKNNLGKDISNEMKGHLRLQYDRSYTETTIFQDIPVSIRTKISQKLYEPYLKEVAL FRGCSTTFLNHIATKVHEEFFLPGEVVIQQGNIVNQLYIVCHGELEEIAKIEEDCNMVGIDHLMHLQTYNSFGEVSFLCNIAQPHTIRVRDLCKVLRLDK QSFKEIIEMFVPDARIILNNLLEGKDPNLRKTILESDVTLDIIKSESELVTRLNSVAFDGDLYKLKRLVTRGGLDPKRTDYNGRSPLHVAASKGFKDITL FLIGQGLEINTSDSFGNTPLLEAVKHGHEEVAFLLMKEGATLATMEEDGGDFLCKTVARREFDLLRRALACGVNYNAPNYDGRTALHVATSQGLCAFASL LVDAGASVLAKDRWGNTPLDEARVGGDSAIIGLLKTARIDQMKELSNLPHEIEDGNQPKKCNVFPFHPKDEARRLDGVTLWVPQTIEELIKEASEHLRSH GGSILSENNCRIVDVTMIHNDQNLYLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10001999 [exp]	0	1
AT5G66900			Disease resistance protein (CC...		Lus10020779 [exp]	1.0	0.9650
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10039864 [exp]	1.7	0.9492
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	4.5	0.9529
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039702 [exp]	4.9	0.9458
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	5.2	0.9329
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	6.9	0.9262
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10010831 [exp]	8.1	0.9265
AT1G75720			Plant protein of unknown funct...		Lus10036971 [exp]	9.2	0.9351
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10034869 [exp]	9.9	0.9219
AT1G60360			RING/U-box superfamily protein...		Lus10022967 [exp]	10.1	0.9430

Compare expression of checked genes

Lus10001999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.