Plant FIBer expression Database

Lus10002001 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G23100 858 / 0 ATECS1, CAD2, GSH1, PAD2, RML1, GSHA ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035496
[exp]
1049 / 0 AT4G23100 858 / 0.0 ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G126900
[exp]
903 / 0 AT4G23100 881 / 0.0 ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
Potri.001G104500
[exp]
901 / 0 AT4G23100 865 / 0.0 ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0286 GCS PF04107 GCS2 Glutamate-cysteine ligase family 2(GCS2)
Representative CDS sequence
>Lus10002001 pacid=23171878 polypeptide=Lus10002001 locus=Lus10002001.g ID=Lus10002001.BGIv1.0 annot-version=v1.0
ATGGCGGCAATCTTCTCGCAGGCTGGCCCATCGCATACCCTCCCCAGGGAGGTTATGCAATGTAAAGGTGGACAAGGTGGGTTTTTTCTCGCAGCTCAAC
GTCGAGAGTCATCTAAACTAAGGGAAACGGGTCTCAGAGTGTCCTCATCATCATATGAATCTACCAAAAGATGCGGCATGCTGAGGTTGGACTCTCCATT
TAAGGGGGGCAAGCGAGGACGTGAGTTTATTGTTGCAGCAAGCCCTCCGACAGAAGATGCTGTGGTTGCTACTGATCCACTAACGAAAGAAGATCTCGTA
GGATACCTTGCCTCTGGCTGCAAACCTAAAGATAAATGGAGGATAGGCACAGAACATGAGAAGTTTGGTTTCGAGTCTGGAAGTTTACGCCCAATGAAAT
ATGAGCAAATTTCGGAGTTGCTTAATAGTATTGCTGAGAGATTTGATTGGGATAAAGTAATGGAAGGTGACAACATTATAGGACTCAAGCAGGGTATGCA
GAGTATATCACTAGAGCCTGGTGGTCAGTTTGAACTCAGTGGTGCACCTCTTGAAACTTTGCATCAAACTTGTGCTGAGGTTAACTCACACCTGTATCAG
GTAAAAGCTGTTGCAGAGGAAATGGGAATCGGATTCTTAGGAATTGGGTTCCAGCCCAAGTGGGGAATCCAAGACATACCTGTCATGCCAAAGGGTAGAT
ATGATATCATGAGGAACTATATGCCTAAGGTTGGCACACTTGGACTAGATATGATGTTCAGGACGTGCACTGTTCAGGTTAATCTGGACTTCAGTTCAGA
AGCTGACATGATAAGGAAATTCCGCGCTGGCCTAGCTTTACAGCCGATTGCAACGGCTCTTTTTGCTAATTCGCCTTTTACCGAAGGAAAACCAAATGGT
TATCTCAGCATGAGAAGCCATATTTGGATTGATACTGATAGGAACCGGACAGGCATGCTACCTTTCGTCTTTGATGACTCCTTTGGGTTTGAACAGTATG
TTGATTATGCTCTCGACGTTCCCATGTATTTTGTTTATCGCAAGAAGAGATACGTTGACTGTACTGGAATGTCTTTCCGGGACTTCATGGCTGGCAAACT
TCCTTGTCTTCCTGGTGAATTCCCGACCCTTAACGACTGGGAGAATCATCTCACAACAATATTCCCGGAGGTTAGGCTGAAAAGGTACTTGGAGATGAGG
GGTGCTGATGGAGGACCCTGGAGGCGGCTGTGTGCTTTGCCAGCATTTTGGGTTGGACTGTTGTATGATGAGGTCTCCCTTCAAAATGTTCTTGACTTGG
TTGCTGACTGGACACCTGAAGAAAGGCAAATGCTGAGAGATAAGGTCCCAAGGTTGGGCTTAAAGACAGCATTTCGTGACGGATTTCTTAAGCACGTTGC
TGAAGATGTTGTAAAGCTGGCCAAGGATGGACTAGAAAGAAGAGGCTTCAAGGAGGTTGGATTCTTGAACGAGGTGGCTGAAGTGGTCAGAACAGGTGTG
ACACCGGCTGAGAAGCTTTTGGATCTGTACAATGGAAAATGGGGACAATCAGTTGATCCTGTGTTTGAGGAGCTACTTTACTGA
AA sequence
>Lus10002001 pacid=23171878 polypeptide=Lus10002001 locus=Lus10002001.g ID=Lus10002001.BGIv1.0 annot-version=v1.0
MAAIFSQAGPSHTLPREVMQCKGGQGGFFLAAQRRESSKLRETGLRVSSSSYESTKRCGMLRLDSPFKGGKRGREFIVAASPPTEDAVVATDPLTKEDLV
GYLASGCKPKDKWRIGTEHEKFGFESGSLRPMKYEQISELLNSIAERFDWDKVMEGDNIIGLKQGMQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQ
VKAVAEEMGIGFLGIGFQPKWGIQDIPVMPKGRYDIMRNYMPKVGTLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNG
YLSMRSHIWIDTDRNRTGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKRYVDCTGMSFRDFMAGKLPCLPGEFPTLNDWENHLTTIFPEVRLKRYLEMR
GADGGPWRRLCALPAFWVGLLYDEVSLQNVLDLVADWTPEERQMLRDKVPRLGLKTAFRDGFLKHVAEDVVKLAKDGLERRGFKEVGFLNEVAEVVRTGV
TPAEKLLDLYNGKWGQSVDPVFEELLY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G23100 ATECS1, CAD2, G... ROOT MERISTEMLESS 1, PHYTOALEX... Lus10002001
[exp]
0 1
AT3G47780 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, AT... Lus10023612
[exp]
1.7 0.9399
AT1G22380 ATUGT85A3 UDP-glucosyl transferase 85A3 ... Lus10014831
[exp]
2.0 0.9439
AT1G76690 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOAT... Lus10009473
[exp]
3.0 0.9453
AT4G15550 IAGLU indole-3-acetate beta-D-glucos... Lus10015515
[exp]
3.5 0.9274
AT4G21440 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 10... Lus10031609
[exp]
5.0 0.9043
AT5G10530 Concanavalin A-like lectin pro... Lus10029555
[exp]
5.2 0.9256
AT3G55700 UDP-Glycosyltransferase superf... Lus10004674
[exp]
7.1 0.9243
AT1G08080 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANH... Lus10014412
[exp]
7.9 0.9266
AT2G40200 bHLH bHLH051 basic helix-loop-helix (bHLH) ... Lus10013917
[exp]
8.0 0.9386
AT5G06060 NAD(P)-binding Rossmann-fold s... Lus10010874
[exp]
8.5 0.8959

Lus10002001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.