Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11450 474 / 6e-158 Protein of unknown function (DUF3527) (.1) AT1G63520 201 / 2e-56 Protein of unknown function (DUF3527) (.1) AT5G59020 110 / 6e-25 Protein of unknown function (DUF3527) (.1) AT1G04490 102 / 4e-23 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT2G33360 102 / 9e-23 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT5G01030 97 / 2e-20 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT2G29510 93 / 3e-19 Protein of unknown function (DUF3527) (.1) AT2G37930 71 / 2e-12 Protein of unknown function (DUF3527) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035493 [exp] 1282 / 0 AT4G11450 462 / 2e-151 Protein of unknown function (DUF3527) (.1) Lus10040721 [exp] 110 / 7e-25 AT5G59020 291 / 1e-86 Protein of unknown function (DUF3527) (.1) Lus10016455 [exp] 109 / 3e-24 AT5G59020 293 / 2e-87 Protein of unknown function (DUF3527) (.1) Lus10021110 [exp] 104 / 1e-22 AT5G01030 291 / 1e-86 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10017200 [exp] 100 / 1e-21 AT5G01030 229 / 4e-64 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10023729 [exp] 99 / 3e-21 AT2G33360 355 / 9e-115 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10014479 [exp] 96 / 2e-20 AT2G33360 287 / 4e-91 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104200 [exp] 766 / 0 AT4G11450 530 / 5e-180 Protein of unknown function (DUF3527) (.1) Potri.003G127500 [exp] 740 / 0 AT4G11450 521 / 2e-176 Protein of unknown function (DUF3527) (.1) Potri.010G066200 [exp] 129 / 7e-31 AT2G33360 333 / 3e-106 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.009G039300 [exp] 126 / 1e-29 AT5G59020 351 / 1e-107 Protein of unknown function (DUF3527) (.1) Potri.001G246200 [exp] 125 / 2e-29 AT5G59020 362 / 9e-112 Protein of unknown function (DUF3527) (.1) Potri.008G171400 [exp] 122 / 1e-28 AT2G33360 327 / 1e-103 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.016G105500 [exp] 110 / 1e-24 AT5G01030 257 / 5e-73 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.006G093600 [exp] 98 / 9e-21 AT5G01030 219 / 6e-60 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF12043 [flax] [poplar] DUF3527 Domain of unknown function (DUF3527)
Representative CDS sequence Show only first row Show all	>Lus10002006 pacid=23171880 polypeptide=Lus10002006 locus=Lus10002006.g ID=Lus10002006.BGIv1.0 annot-version=v1.0 ATGGGCTTGGAAATGGAGTTGCATTTCAAGAAGAGTAGCACTTCAGATCTGAGTCCTAATACCGTCCTTCCTACTAGACATTGTTCTGAGGTTGAAAAGA GAACATCTTATCAGAAACCCCCACGTAAAGATGATGTCTTGAGAGTAAAGGAAGGGTTCACCGAGATTAGCTTTCGTCGTTATCGTAGTACTTCTGCCAA GAATGTTCCTTCTAGGCCTTCTGTTATAGCACCTGCCGTTGAGCTGAAGAGAGGCTCCATGTACCAAAGTTCTAGAGAGGTAAGGAGAATGAAGAAGATG GAGTCTTGTTATGATGGAAGGAGGAAGATCGAATTGTCACGTGGCAGCGAAAGTGCTTTCTCCTTGGACGTTGTTGAGTCTCTGTGTAGCTCAGATGAAG AGGAAGCTCCAAAGGTGCATCCTTCAAATGCTTTAGATGCAAAATTGAGCCTGACATCTACTCAGAAGTACTCTTGTGTTGACCCTTGTTCCTCGGCTGG GTTTATCGAGTTTTGTCCGAATCCAGATGTTAGACAACGACGAGATCCTGGAACGATTGGAAGTCGTTTGAGATATGTGAATCCAGGGTTGAGAAGTGAA AATGTTGCTGGTCCTCAAAATGATGGTAATGGCCTTCTTGAAAGAGATGCACCAGCCTTCCAGATAACACTTTCTGCTAAGCTTGAAATGCCTCATTCAT CACCTTCTACTTCAGAGAGTGATTGCTCTACTCGTGGAAGCTCTAAGTCGCGATTTGTACCTATCAGAAAGATGTTTGATCCGTTCATCAAGTCCAAGTC TTCAAGGAGTCCATTGAGTTATGTTCCTGAACTAATTAGTGAACAGAAAGCAAACAGTATGACAGCAGCCATGAGAAGGAATGAGATATTAAGGAAGTCT TTGTTAAATGACTTCTCAAATTCTGCTCAAAATTTGAATAGTCAGCAGCATATGAAGAAGGATCATAATCATTCCGATGTCTCATGTTCAGCAGTGTACC TGCATGGCTGTCTCAAGCTGAGGAATAAGAACAAGGTCCCGTATTTTGAGTTCTCGTTGACTTCTCCCGAAGAGGTTCTGGTGGCAAAGACATGGAAATT AAGTAATGCTTCCAAGTGGGTGTATACTTTCCACTCCATTTGCAGTAGAAAAAGGAGCAATGTCAGTGGCCGCGGTACTCCTGATGATAACAACAATAAA GAGCCCATGGTGGTCGGTCAGATGCACGTTTCCTCATACTTGCATTCCGAAGTACAAGATTGTCCACTTTCAGACAACTCAATGGTGACTGAATTTGTGT TGTACGACATTGCACACACAAGAAACAGTGTTTCATCTTCAGAAGGTTCCCCTGATGTCAAAACTGTCAATGGTGCCTTTCCTTGTCTGGATGGTCGAGT GCACGACTTGGATGAAAACAGGAACAATTGTCCTAAAACCATTTCTGATTCCACGAGTCAGAATCCATGGCCGGTTGCTGGTTTACAGCCAGATCTTGAG ATTGCCGCCATTGTCATTCAAATTCCTTTTGCAAAGAGAGAAAGTTTGAAGTACAAAAGAGGTTACAAGAGCAGGAAGAAAGTACATTTAAACCTGCTTA ACCTCTCCATGGCCGAGCAGGTTGCAAAGCAAAGTCCCGACAGAGAAAGTTTCGAAAAGGTGAAGGTGGTGATCCCAACTGGAAATCACAGTATGCCAAC TGATGATGCTGAAAGCCAAGGCCCTTCCTCATTGCTCGATCGATGGAAGTTCGGTGGAGGCTGTGACTGTGGTGGCTGGGATATGGCTTGCCCCCTTACT GTTTTTGGGAATCCTGACATTCAATGTAGTGAAGATGAACCGCTTGTAGATAAGAAGCAGCCTTTGGAACTTTTGATTCAGGGAACGAAAGAGAGGACAC CAGCATTGATGATGAGAGTCGTAGAAGAGGGAGAATATGCCGTTGATTTCCATGCGAAGCTATCGACACTACAAGCATTTTCCATATGCGTTGCCATGCT GCATGGCTCAGAAGCTGCTAGTGCGGTTGGGGAGAACAGAAGCAAGAAGCTGCCACATTGCAACTCACTCAAAGTACTCATCGAGGAGGAGGTGAAGTTC TTAATCGATGCAGTCGCCGAGGAAGAAAAAAAGAAACCCTCTAAGAAAATGGAACTCAATAAGCAGCAATCTTACAAGCTCAAACCTCCAATTTCTCCAT TTGCTCGGGTATAG
AA sequence Show only first row Show all	>Lus10002006 pacid=23171880 polypeptide=Lus10002006 locus=Lus10002006.g ID=Lus10002006.BGIv1.0 annot-version=v1.0 MGLEMELHFKKSSTSDLSPNTVLPTRHCSEVEKRTSYQKPPRKDDVLRVKEGFTEISFRRYRSTSAKNVPSRPSVIAPAVELKRGSMYQSSREVRRMKKM ESCYDGRRKIELSRGSESAFSLDVVESLCSSDEEEAPKVHPSNALDAKLSLTSTQKYSCVDPCSSAGFIEFCPNPDVRQRRDPGTIGSRLRYVNPGLRSE NVAGPQNDGNGLLERDAPAFQITLSAKLEMPHSSPSTSESDCSTRGSSKSRFVPIRKMFDPFIKSKSSRSPLSYVPELISEQKANSMTAAMRRNEILRKS LLNDFSNSAQNLNSQQHMKKDHNHSDVSCSAVYLHGCLKLRNKNKVPYFEFSLTSPEEVLVAKTWKLSNASKWVYTFHSICSRKRSNVSGRGTPDDNNNK EPMVVGQMHVSSYLHSEVQDCPLSDNSMVTEFVLYDIAHTRNSVSSSEGSPDVKTVNGAFPCLDGRVHDLDENRNNCPKTISDSTSQNPWPVAGLQPDLE IAAIVIQIPFAKRESLKYKRGYKSRKKVHLNLLNLSMAEQVAKQSPDRESFEKVKVVIPTGNHSMPTDDAESQGPSSLLDRWKFGGGCDCGGWDMACPLT VFGNPDIQCSEDEPLVDKKQPLELLIQGTKERTPALMMRVVEEGEYAVDFHAKLSTLQAFSICVAMLHGSEAASAVGENRSKKLPHCNSLKVLIEEEVKF LIDAVAEEEKKKPSKKMELNKQQSYKLKPPISPFARV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11450			Protein of unknown function (D...		Lus10002006 [exp]	0	1
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015777 [exp]	2.2	0.8839
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	3.9	0.8643
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	4.9	0.8744
AT4G35335			Nucleotide-sugar transporter f...		Lus10013845 [exp]	5.3	0.8675
AT3G13980			unknown protein		Lus10008457 [exp]	7.6	0.7968
AT3G56370			Leucine-rich repeat protein ki...		Lus10012877 [exp]	10.5	0.8381
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	13.4	0.8537
AT1G54610			Protein kinase superfamily pro...		Lus10033975 [exp]	13.9	0.8686
AT5G41760			Nucleotide-sugar transporter f...		Lus10036726 [exp]	14.6	0.7984
AT2G05920			Subtilase family protein (.1)		Lus10034900 [exp]	15.5	0.8495

Compare expression of checked genes

Lus10002006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.