Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63640 870 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 772 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G73860 611 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 599 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G44730 521 / 1e-166 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT2G47500 485 / 5e-154 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 483 / 2e-153 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 472 / 5e-149 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G10310 437 / 2e-136 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27550 319 / 2e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032264 [exp] 1365 / 0 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 1341 / 0 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032897 [exp] 525 / 1e-167 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10029865 [exp] 502 / 3e-160 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10001306 [exp] 494 / 4e-157 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10015212 [exp] 486 / 2e-155 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10009851 [exp] 477 / 3e-151 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10018049 [exp] 451 / 9e-141 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10042045 [exp] 448 / 4e-140 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G127800 [exp] 1061 / 0 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G104000 [exp] 1036 / 0 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 768 / 0 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 757 / 0 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G467600 [exp] 525 / 7e-168 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 514 / 1e-163 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.013G011500 [exp] 502 / 5e-160 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 491 / 5e-156 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 488 / 5e-155 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 487 / 1e-154 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10002007 pacid=23171887 polypeptide=Lus10002007 locus=Lus10002007.g ID=Lus10002007.BGIv1.0 annot-version=v1.0 ATGGGAATATATGCCAGATTTGGAAGTGTAGCAATTCCACACGAAGTAAGGGTTGAAGATAATGGTTACGCTCTGAATCGTGGAAGTTCTGGGCTGGGTG CAGGTAGTGTGAAGTCACTGGTTGACTGGTTGAACAATTTGTTTCCGTATCTAAACTTACCCTCTGAAACATCCGAGGAGGAGCTAAGAGACTGCTTGAT TGATGGTACTGTCCTGTGCAGCATCTTGAACAAACTGAGACCTGGTTTGATTGATATGAGAGCCAGTTTCAGGCCTGGTGTGGACTATCTCAAAACGTTT CTGGATGCAATGGATGAAATGGGCCTTCTTAGGTTTGTACTTGAGGACATACAACAGGGCTATATGTTGCCTGTACTGCAATGCCTTGGGACTCTGAAGG AGCATTTAGAAAATGTGGATATTCATAATAATTCAAGAAGGAGATGGAATGTGCACGAGGTGGAGCTTTCTAACAGAGCTGATCATTCTCAACGTGATTC ATCATTAGGCTTGGAGAACTCAACTGTTGATGGTGAAGAAAAGCAAAGGAGTGCCTCTGATGGTTCACATCGACTTGGTCTGCCAGGTTCTGATTCATCA GAACCGTCTCATTCTCTGGTACATGATGCTGGAAATAAGTTGTCCGAGGTGTTGAAGCAGGGTTTATCAGCTGAGTGCTCAGGTGATAACATTGCAGAGC TGATAAAATTTAGTACAGTGGATAATACATCAACCCGTGCATTGTTCGATTTTCTCAATAAGATACTTGATGAGAGCATTGACAAAAATGATGGCCATGT TTATCATATGGCAAGGATGTTGAAGCAAGTCGTCCAAGTTATTGAACATAGAGTGTCTGCTCAAGCAGAAAACTTGAAAGAGGCAATACCCTGGAAAATC TTATTCCATTTTCTATTCCCCCAAAACAATCTTTGTACGGCTCGCTCTGGAAAGTACCAGTCAAGAGTAAAAGTATTTGAGACCATAGCTTCCGAGAGCA CAGAAGAAATTGAGATTGAGAAAGTTGAAATAGAAGAAAAGGAAAGGCTCAAAGAACAGGATTTGGTTAGGTTGAAGCAAGATAACATCTCTCTGCAGAA TGAGAAATCTGCTCTAAAACATGAATTGGAGACATTGAAGAAGGCGCATGAAGAGCATTGCTTACAGTTAGAAGCACAGGCTAAGCAAATAACACATGCG TTGGAAAAGAAGTCACATGACCTTGAGTGTTCTCTGATGGAGGCAACGAAGCGGGTGAAACAACTCGAATCCTTTTCAGAATCCAAATTTGAGGGATTAA AGAAGAAAGAGGATACCTTCAGAGTCTTCCTTGGTAATCAGCAGAGAGTTTTGCAGGATGCTGTCCTCATATGTTATATTGCATTGCTAGGAACTGAGAG CAGCTTATGCATCTATCAGGCAAGAAGAGTGGAGCTTGAAGGAGTAGTGCATGCTGCTGAGAATTATCATTCTGTTCTTGCAGAAAATAGGAAATTATAC AATGAGGTTCAGGATTTGAAAGGGAACATAAGAGTTTATTGTAGGGTAAGGCCATTTCTCCCCGGCCAATGCAAGAAACTAACGACAATAGAGTATATGG GGGAAAATGGCGAGTTACTAGTCTCAAATCCATCAAAGCCGGGGAAAGATACACATAGGATGTTCAAATTTAATAAAGTTTTTGGTCCAGCCGCTAGTCA AGAGGAAGTATTTTTGGATACTCGGCCTTTAATTCGGACCGTTCTTGATGGATTCAATGTATGTATTTTTGCTTATGGCCAAACTGGATCAGGAAAGACA TACACAATGAGTGGGCCTAACATATCATCAAAGGAAGGTTGGGGAGTCAATTATCGAGCGCTACGTGACCTTTTTCAAATTGCTCAAAGCAGGAAAAGCT CGGTTACATATGAGATTGGTGTTCAAATGGTCGAGATCTATAATGAACAACCAAATGGGTTAGCTGTCCCTGATGCCAGCATGCATCAAGTAACTTCGAC GGAAGATGTATTGGAGTTGATGAATATCGGGTTGATGAACCGTGCTGTTGGTGCCACCGCCTTAAATGAAAGAAGTAGTAGATCCCACAGTATACTCACC ATTCATGTCCGAGGCATGGATTTGGAGTCTGGTACTCTGTTACGAGGGAATCTACACTTGGTAGATCTTGCTGGCAGTGAAAGAGTGGATCGGTCTGAAG TGACTGGAGATAGACTAAGGGAGGCACAGCATATAAACAAGTCCCTCTCTGCACTTGGAGATGTAATATTTGCCCTTGCACAGAAAAGTCAACATGTGCC GTACCGAAACAGCAAACTTACTCAAGTCCTTCAGAGTTCTCTAGGTGGTCAAGCGAAGACCCTTATGTTTGTGCAGCTTAATCCTGATATTGAGTCGTAT TCTGAAACTTTGAGCACTCTGAAGTTCGCTGAGAGAGTTTCTGGAGTTGAGTTGGGAGCTGCAAAGAGCAATAGGGAGGGGAGAGATATTAGAGAACTTG TGGATCAGGTCACATCACTGAAGGAAACGATTACAAAGAAAGACGAAGAGATTGAGCGATTGCAGCTGCTCAAGGTTAATGTCAATGGCACAAGGTCTAT CCGTAATGAGTCCTCTCCAAGAAGATTTTCAATTGGACATTTGCAGCACAGCCCTAAATCACCTGGAAGGAAAACCGCACCACTCTCTGACAAAGAAAGA GACATCTGCTCTGAATACGGTGAAAGAACTTCTGATACTTTTTCACTGCAGTCAATGGATGAGTTAAAGCGGCATAAGGGACGTTTAGGACATTCAAAGC CAATGACTGATTTAGCAGGGGAAGCAGAACATGTGGCTGAGTCCAAGCTTGCAGGAGCAAAGGGAGGCCATAATTCCAAGGAAGAAGCTGCACTCTTCTG TGGTGGAGGTGGAGATTCCGATGAGAGAATAAGTGACATATCGGATTCTGATGAGAGAATAACTGAAACTGATGATTCTTCAGGCAGTGCAGTAGAACAA GCACATTTCCCCGAACCTGAAAGACAAATGGAACCTGCTGGTTCGACTCAAGCTGCAATCTCATCTAGGATTGTGAATTCGGTAGAAGCCACCCGACGAT ATGGTAACTTAGCACAAGCTTCAAGATCTACTGGAGCTGGCAGTCCAGCTGTAGGTACAGAAAGGCGTGTTAGTTCGAATCTTCCAAAACCCTCTCAAAA GGTGCCACAAACGAGAGTATCTCGCTTGTCATTGCATAAGCCAGCCGCCACCACCACAAAGTTTCAATCAACTCCTCCGAACTCTAGAAAACCTACAACT ACAGCCGGCAACTCCTCAGCGAGCAGATCAATCAGGCCAACGGGGGGCATCAGAACTGAAAAGAGTCTCTAA
AA sequence Show only first row Show all	>Lus10002007 pacid=23171887 polypeptide=Lus10002007 locus=Lus10002007.g ID=Lus10002007.BGIv1.0 annot-version=v1.0 MGIYARFGSVAIPHEVRVEDNGYALNRGSSGLGAGSVKSLVDWLNNLFPYLNLPSETSEEELRDCLIDGTVLCSILNKLRPGLIDMRASFRPGVDYLKTF LDAMDEMGLLRFVLEDIQQGYMLPVLQCLGTLKEHLENVDIHNNSRRRWNVHEVELSNRADHSQRDSSLGLENSTVDGEEKQRSASDGSHRLGLPGSDSS EPSHSLVHDAGNKLSEVLKQGLSAECSGDNIAELIKFSTVDNTSTRALFDFLNKILDESIDKNDGHVYHMARMLKQVVQVIEHRVSAQAENLKEAIPWKI LFHFLFPQNNLCTARSGKYQSRVKVFETIASESTEEIEIEKVEIEEKERLKEQDLVRLKQDNISLQNEKSALKHELETLKKAHEEHCLQLEAQAKQITHA LEKKSHDLECSLMEATKRVKQLESFSESKFEGLKKKEDTFRVFLGNQQRVLQDAVLICYIALLGTESSLCIYQARRVELEGVVHAAENYHSVLAENRKLY NEVQDLKGNIRVYCRVRPFLPGQCKKLTTIEYMGENGELLVSNPSKPGKDTHRMFKFNKVFGPAASQEEVFLDTRPLIRTVLDGFNVCIFAYGQTGSGKT YTMSGPNISSKEGWGVNYRALRDLFQIAQSRKSSVTYEIGVQMVEIYNEQPNGLAVPDASMHQVTSTEDVLELMNIGLMNRAVGATALNERSSRSHSILT IHVRGMDLESGTLLRGNLHLVDLAGSERVDRSEVTGDRLREAQHINKSLSALGDVIFALAQKSQHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDIESY SETLSTLKFAERVSGVELGAAKSNREGRDIRELVDQVTSLKETITKKDEEIERLQLLKVNVNGTRSIRNESSPRRFSIGHLQHSPKSPGRKTAPLSDKER DICSEYGERTSDTFSLQSMDELKRHKGRLGHSKPMTDLAGEAEHVAESKLAGAKGGHNSKEEAALFCGGGGDSDERISDISDSDERITETDDSSGSAVEQ AHFPEPERQMEPAGSTQAAISSRIVNSVEATRRYGNLAQASRSTGAGSPAVGTERRVSSNLPKPSQKVPQTRVSRLSLHKPAATTTKFQSTPPNSRKPTT TAGNSSASRSIRPTGGIRTEKSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63640			P-loop nucleoside triphosphate...		Lus10002007 [exp]	0	1
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10014915 [exp]	4.9	0.9434
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	5.7	0.9583
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	7.1	0.9552
AT3G52110			unknown protein		Lus10039611 [exp]	7.7	0.9520
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10033979 [exp]	8.1	0.9539
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	8.9	0.9444
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027350 [exp]	9.5	0.9363
AT5G46070			Guanylate-binding family prote...		Lus10025456 [exp]	9.5	0.9199
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	10.5	0.9405
AT3G51290			Protein of unknown function (D...		Lus10041885 [exp]	12.0	0.9407

Compare expression of checked genes

Lus10002007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.