Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63670 85 / 1e-16 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT3G53540 62 / 2e-09 unknown protein AT2G45900 61 / 3e-09 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT4G28760 52 / 1e-06 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT2G20240 45 / 0.0003 Protein of unknown function (DUF3741) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035490 [exp] 1351 / 0 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10042850 [exp] 74 / 5e-13 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10028147 [exp] 70 / 4e-12 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10022843 [exp] 66 / 1e-10 AT4G28760 369 / 2e-116 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10011911 [exp] 63 / 7e-10 AT4G28760 535 / 9e-179 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10024434 [exp] 57 / 4e-08 AT3G53540 449 / 2e-144 unknown protein Lus10036356 [exp] 53 / 8e-07 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10025296 [exp] 51 / 5e-06 AT3G53540 456 / 7e-146 unknown protein Lus10014776 [exp] 50 / 6e-06 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G103400 [exp] 325 / 3e-98 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.002G160000 [exp] 87 / 3e-17 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.014G084600 [exp] 79 / 8e-15 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G253600 [exp] 64 / 3e-10 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.006G213700 [exp] 59 / 1e-08 AT3G53540 433 / 1e-136 unknown protein Potri.016G080200 [exp] 59 / 1e-08 AT3G53540 234 / 1e-64 unknown protein Potri.014G194600 [exp] 54 / 5e-07 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [flax] [poplar] DUF3741 Protein of unknown function (DUF3741)
Representative CDS sequence Show only first row Show all	>Lus10002008 pacid=23171884 polypeptide=Lus10002008 locus=Lus10002008.g ID=Lus10002008.BGIv1.0 annot-version=v1.0 ATGAGTACCAACAGTTCGTATGCAACGGAAAGGAGATCATCTCCGAGGAATCCTTTGCCGAAGAACAATATGCCAAGTAGTCCTCATCCTATGAGCCCTA TGCTGCTTAAGAGTCCCATGCCTAAAAGCCCTGCTCGTCATGACACATACAAGTCTAGATGCGCTCATTGCTTACTTGGTTTCTTCCGTTTTCGCCAAAC CCATTCCAAGAAGCTCATTTCCGACTACAGGAATGCTAGCAGACATTATGCAGATGATGGACTATCAAGAAATAAGCTTGACTGGCTTCCAAGCGTTGAT GAGAAATGCGATTGCGTCGATACTGAAGGAGATCTCAGAATTAACTCCGGTCATAAAGAGGTGCTCCAAGTCAAAGTGGATATTTTGAAATCAGATTCTA AAAGTACTGGTAGCAGAACCAAGCGCCATAAGAAGCGTAGAAGGGCTCGTCGTTTACCTATATCTGGTTGTTATGATGTTGCAACTATGGGACTTGGGAA AAGAGTACCTGAACGCTTGATGGATGGCAGATCATCCAACGAGGACAAATCCATGGTGACAGCAAACTCCCGGTCAAACCAAGATCGAAATTATCTCAAA TGTCGGAATGAGATCAATCTTCAAGTCCACATGAATGAAGCAGCTGAAGCATTTATAAACCAGAGATTGGTTGACGGGCAAGTTCTTGGTGACGATGAAG GAAAGGTCCAATCAAAACATTTTTTGGATGCATTAGATGTTCTGAACTCTAACAGAGATTTGTTCGCAAAACTCCTACAAGACCCCAACTCTCTACTAGT GAAACATATGGAGGATTTGAGAGACTCTCAGCAAAAGTTGTCAGGCTTGGTCAATGAGCCCCTAGAGACGATTGTAGTCTTGAAGCCTGATATGAAAGGC TTGGAAGATCATGCAGATATACAACAAAATGCAAGGCCTGGTCTTTCTCCTTTTGGACAAATGAAGCGTAAGTTGATGAAGGCACTTGGGCCACACAGAA AACCTCAGCTGCCGACACAAGCTGAATGTAATGAAGGAACAAGAATGGAAAGTGATGAAACAAACTTGCCTGAGCAAACGCATCCTGAGGAGGTCCAGAG TAATGACATGAGAAATACGCTAAGAAAGTTCATGACAGATGTGAGAAAAGAATCCGTTCCAATCAGTGCGAGCAACTATAAGAGCTCGAACATCGTCCTT TTAAGGAAGCAGGGAACAAAGACCTGTGATGGAATTTGCTCTATTGATGAGTTGGAATACTTGCATACAGTTAGTACTCGAGGTAAGAGAGAACTTGGCT TTGTTACTCCACAACTGAGAATTTCCCCTCACAGGAATTCTCAAATGGCACAAGAGAGCAAGTGCTTCAGTCCTCAGAGGCAAAATTTTGAGGCTTCCCC TCGATCTGATGCTAACAGAAGATTTGAGATGCTTGAATCCCAGCCGAGCATCTCAGATGGAATTTCTACTGATAAAGGGTGTGGAGATCGATCTACTGGC AACTATATTCATTCACACTCCAAAACTAGTGCCAGCTTTGAAGTACAAACAGATCATAGTTTTGAGGATACCAGTACTGCTAGAACAGTCTCAGAACCAG ATGGTATAGATAGTCGCGTGGTAGTTGAATGCATCGACACGCCAAGAACATTTGATTCGTTAAGACCGGATTCTTCCATCGAAAACCAAGCATCCATGTA CTCAGAAAGTTGTTATATGTCAAGCCCTCCACATGCTAATAGATTTGAAGTTTTGGATAAAATGGAAGATATACCAGAACAGCCTAGTCCAGTTTCTGTT CTTGAACAATTTTGCACTGAAGATATCACTAGTCCCATAAGCAAAAAGTCTCATTCTGACTTTACCATCCAAACTAGTTTTGAAGAAAAGTGGACTGCCA CTGTTCAGTACCAGGCCCAGGAACAGCACAGATTCATGTCTGAGAGAATCACCTCAATATTGAACGCAGCGATTTCAAGTTGGGACGAACTCCTATTTAG GTGTCATTGGTCAGATGAGTCTCTCTTAGAAAATATACTTGACGAAGTTGATATCCGTGTGTGCGACAATATAATACTCCTCGACTACGTGAACGAGATT TTGCTGGAGGCGTACCACCATTGTTTGAAATTGTCACCCTGGCTGTTGTCATCAATGAAAACAAAGATACGGCCAGTTTCAGTAGCAGAATATGCAACCC AAGAAGTGATGAAGTGCGTCGACTGGAACCTTCTTTTGCTGCCGCCTATGGAAACTCTAGAGGAGTTTGTTAAAAAGGACTTGTTGAATTCGAGCACGTG GACGACCAGCAAAGGTGAAGCTGATGACATTATTAGTGATGCTGCAGAAAGCATCATACAAGACTTGATCATGGATTTGGTCCAACTTTGA
AA sequence Show only first row Show all	>Lus10002008 pacid=23171884 polypeptide=Lus10002008 locus=Lus10002008.g ID=Lus10002008.BGIv1.0 annot-version=v1.0 MSTNSSYATERRSSPRNPLPKNNMPSSPHPMSPMLLKSPMPKSPARHDTYKSRCAHCLLGFFRFRQTHSKKLISDYRNASRHYADDGLSRNKLDWLPSVD EKCDCVDTEGDLRINSGHKEVLQVKVDILKSDSKSTGSRTKRHKKRRRARRLPISGCYDVATMGLGKRVPERLMDGRSSNEDKSMVTANSRSNQDRNYLK CRNEINLQVHMNEAAEAFINQRLVDGQVLGDDEGKVQSKHFLDALDVLNSNRDLFAKLLQDPNSLLVKHMEDLRDSQQKLSGLVNEPLETIVVLKPDMKG LEDHADIQQNARPGLSPFGQMKRKLMKALGPHRKPQLPTQAECNEGTRMESDETNLPEQTHPEEVQSNDMRNTLRKFMTDVRKESVPISASNYKSSNIVL LRKQGTKTCDGICSIDELEYLHTVSTRGKRELGFVTPQLRISPHRNSQMAQESKCFSPQRQNFEASPRSDANRRFEMLESQPSISDGISTDKGCGDRSTG NYIHSHSKTSASFEVQTDHSFEDTSTARTVSEPDGIDSRVVVECIDTPRTFDSLRPDSSIENQASMYSESCYMSSPPHANRFEVLDKMEDIPEQPSPVSV LEQFCTEDITSPISKKSHSDFTIQTSFEEKWTATVQYQAQEQHRFMSERITSILNAAISSWDELLFRCHWSDESLLENILDEVDIRVCDNIILLDYVNEI LLEAYHHCLKLSPWLLSSMKTKIRPVSVAEYATQEVMKCVDWNLLLLPPMETLEEFVKKDLLNSSTWTTSKGEADDIISDAAESIIQDLIMDLVQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63670			Protein of unknown function (D...		Lus10002008 [exp]	0	1
AT1G36990			unknown protein		Lus10028037 [exp]	1.7	0.9044
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10011786 [exp]	7.1	0.8925
AT2G34670			Protein of unknown function (D...		Lus10036155 [exp]	10.2	0.8693
AT5G06560			Protein of unknown function, D...		Lus10016203 [exp]	12.0	0.9003
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10025420 [exp]	23.9	0.8843
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10012923 [exp]	24.9	0.9002
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	25.0	0.8677
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10034296 [exp]	26.0	0.8908
AT1G44790			ChaC-like family protein (.1)		Lus10028029 [exp]	28.9	0.8509
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	33.1	0.8975

Compare expression of checked genes

Lus10002008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.