Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005830 [exp] 86 / 2e-21 ND / Lus10032723 [exp] 73 / 1e-14 ND / Lus10038610 [exp] 56 / 3e-09 ND / Lus10034889 [exp] 48 / 2e-06 AT1G09190 115 / 9e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040010 [exp] 48 / 2e-06 ND / Lus10036784 [exp] 46 / 8e-06 ND / Lus10012295 [exp] 46 / 1e-05 ND / Lus10010048 [exp] 44 / 1e-05 ND / Lus10033157 [exp] 45 / 2e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002009 pacid=23171891 polypeptide=Lus10002009 locus=Lus10002009.g ID=Lus10002009.BGIv1.0 annot-version=v1.0 ATGATCATTACTAACAGCGGCTTGGAATATGTTGTTAGAGGTGTGTTCGAGGTTACATTGAACAAAAATTACCCCAGCTACTTCGAGTTGAGGAAGACTG CAACTGATGACTTGAAGTACGGTGGGATTGGGAGGATGTTCTACCTAATCCCAGGACGGTCCATGGTTGGTGGTCTTCGCCAAATGTCTACAAATAGAGA CACATATAAGTTGGCTGAGGATGCAAACCTTGGCACTCTATCAATCTTCATGGAAGTAACCAATATTGAAGGTTTCATGGCTGACAACGAAGATGACGAA TTTGAGTTCGAACGTGACTATGTCAACAGTGATGGTGAGCATGAAAATTCTCATGTGGCTGCGGATGTTGGGATTGTCCATTTGGTCGATGACTTTGACC GAACAAGTGACAACGGATTTTATTTAGCTATGGAGGAACTTGGTGTTGGAAGACTACATAGAAGGCGAAGGGCTCGGAAAGAGGCAGATGGTGAATGTGT AGAGGTAGTGAATGAGTTCAGGATGTTCACGCCTGATAATAGTGAAGTCCCTAACGGCGAAAGAGCCATTGATGACGAGCACCAACAAGCACCCAACATC CACGAGCAATTTGTTCAACATTCGCTGCACGACGAGCACAACCGATGCTCAATCCACCGAAAGAACACACAATCGGTGGAGCCGTTCCAAACTGGACACC GTAGGAATGGTCTTCCTCGATTAGCAACCGTCCCTGCAACCTTAACTGCAGCTCCGTAA
AA sequence Show only first row Show all	>Lus10002009 pacid=23171891 polypeptide=Lus10002009 locus=Lus10002009.g ID=Lus10002009.BGIv1.0 annot-version=v1.0 MIITNSGLEYVVRGVFEVTLNKNYPSYFELRKTATDDLKYGGIGRMFYLIPGRSMVGGLRQMSTNRDTYKLAEDANLGTLSIFMEVTNIEGFMADNEDDE FEFERDYVNSDGEHENSHVAADVGIVHLVDDFDRTSDNGFYLAMEELGVGRLHRRRRARKEADGECVEVVNEFRMFTPDNSEVPNGERAIDDEHQQAPNI HEQFVQHSLHDEHNRCSIHRKNTQSVEPFQTGHRRNGLPRLATVPATLTAAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002009 [exp]	0	1
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	1.4	1.0000
					Lus10010414 [exp]	2.0	1.0000
					Lus10025056 [exp]	2.2	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	2.4	1.0000
AT2G23810		TET8	tetraspanin8 (.1)		Lus10027256 [exp]	2.6	1.0000
					Lus10010663 [exp]	2.8	1.0000
AT3G26140			Cellulase (glycosyl hydrolase ...		Lus10032312 [exp]	3.3	1.0000
AT2G21720			Plant protein of unknown funct...		Lus10007431 [exp]	3.9	1.0000
					Lus10014229 [exp]	4.0	1.0000
AT2G39518			Uncharacterised protein family...		Lus10031304 [exp]	4.2	1.0000

Compare expression of checked genes

Lus10002009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.