Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63680 844 / 0 APG13, ATMURE, PDE316 PIGMENT DEFECTIVE EMBRYO 316, ALBINO OR PALE-GREEN 13, acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G103300 [exp] 1041 / 0 AT1G63680 1007 / 0.0 PIGMENT DEFECTIVE EMBRYO 316, ALBINO OR PALE-GREEN 13, acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01225 [flax] [poplar] Mur_ligase Mur ligase family, catalytic domain CL0063 [flax] [poplar] PF02875 [flax] [poplar] Mur_ligase_C Mur ligase family, glutamate ligase domain CL0063 [flax] [poplar] PF08245 [flax] [poplar] Mur_ligase_M Mur ligase middle domain
Representative CDS sequence Show only first row Show all	>Lus10002010 pacid=23171877 polypeptide=Lus10002010 locus=Lus10002010.g ID=Lus10002010.BGIv1.0 annot-version=v1.0 ATGGCGTTCTCCTTCCTTACCCATTTCCCACCTGTCACTCCCAAACCATCCCTGTTCTCCCTAAAACCCAGAATTCTGCGGGAACCCTTTCTTTCACTCC CAAAAACTCACTTCTTTTCTCGCTCTCGTCTGCACCATCCAAGTGCCATTGGACCGGACGGCAAGTACTATCCCTCTCCGTCCGGCGAAGACCCTCCAGA AGCACCGGAGGATACTTCTCATGGGGTTAATAAGTTCGCCCAGATCCAAATTCAAGCGGACCGGGCTCGCAAACTCCAGGAGGAGGATTTCAAGAAGCAC GAGTCCACTTACCTCAATGCTCTGGCTGAAACTGAGGACCTCCCTGTAAGTCCTGATTCCAATGGTGGGGACGATTTGTTTGGTGAAATTGATAAAGCTA TTGCCCTGAAAAGGGAACAATCCGTAAAGCAGGGACGTTTGAAACCAAACCCTAAGAAGGAAACTGTGAATGATGCTGGTGGTGGAAATGAGGAGTTGGA GGCGGAAGAAGTGATGGATTTGAAGGAGATTGATGAGTTACAGGGTGTAAAAGTTACAGATTCTGAATCTGATACTGATGATGAAGCTGATGGCGGTGAT AAAGTCGACGATGGGTTCGATATCGATTTCGATATTTTCGGGAAGAAGAAGGTGAGTATAGTTGAGCCAATGTATAGGATGACTTTGGCTGAGCTTTTGG ATGATAGCAAAGTGGTTCCGGTATCGGTTTCGGGGAACTTGGAAGTAGAGATTACAGGGATTCAACATGATTCCAGACTTGTGACTGCTGGTGATTTGTT TGTGTGTTGTGTCGGGAAGAAGACTGATGGGCATTTGTATCTGAGTGAAGCTGATAAGAGAGGAGCAGTTGCAGTTGTGGCCAGTAAAGAGATTGATATA GAGGAGACACTAGGATGTAAGGCCTTGGTGATTGTTGAAGATACTAGTGCTATTTTGCCTGCTTTGGCTGCTGCATTTTACAGGTATCCGTCAAAGAATA TGGCTGTGATTGGGATAACTGGAACAAATGGGAAGACAACCACTGCACATTTGATTAAAGGGCTGTACGAAGCAATGGGGTTGAGGACTGGGATGATGAG CACAGTCGGTTATTATTTACACAGTGACATCAAGTTGGAGTCCCCCAACACAACTCCAGATGCTGTCTTGGTTCAGAACTTGATGGCTAAGATGTATCAT AACGGGACTGAAGCTGTTGTGGTGGAGGCATCTTCTTATGGGCTGGCATTAGGGAGGTGCAACGAGGTGGACTTTGATATTGCTGTTTTCACTAACTTGA CAAGAGACGATTCAGAGTTCCCTGGGACTGACGAGGAATATAGGGATGCTAAAGCCAAGCTCTTTGCGAGGATGGTTGATCCAGAAAGGCATAGAAAGGT CATTAACATCGATGACCCAAATGCACCTTACTTTATGTCGCTGGGGAATCAGAATGTGCCCGTTATAACCTTTGCTATGGACGATAAAAGCGCTGATGTA CACCCCTTAAAGTTTGAGCTCTCGCTTTTTGAGACTTGTGTCTTGGTTAATACACCCCAAGGGTTATTGGAGATTTCATCAGGATTGCTTGGGAAGCATA ACATTTACAACATTCTGGCTGCCGTGGCTGTTGGAATCGCAGTTGGAGCACCATTAGAAGACATTGTAAGAGGGACCGAGGAGATAGATGCTGTACCTGG CAGGTGTGAGTTAATAGATGAGGAGCAGGCGTTTGGCGTGATTGTGGATTATGCTCGCACTCCAGCTGCACTATCTAGATTACTTGATTCAGTGAGAGAG CTTGGGCCTAAACGAATTATAACTGTTGTTGGGTGCTGCGGTGAGACCGATAGAGGCAAAAGACCATTGATGACCAAAATCGCAACAGAGAAAAGTGAAG TAACAATGCTTACATCAGACAACCCGAAAGGCGAAGATCCCTTGGATATCTTGGATGATATGCTAGCTGGTGTAGGATGGACGATGGAGGAATATTTGAA ACATGGTGCAAATGACTATTATCCTCCTCTTCCAAATGGCAATCGTCTTTTTCTTCATGATATTAGGCTCGTAGCTGTTCGTTGTGCTGTGGCTATGGGT GAAGAAGGAGATGTTGTCGTTGTTACCGGGAAAGGCCATGAGACGTATCAGTTAGAAGGTGAGAGGAAGGATTTGTTTGACGATCGAGAGGAGTGTCGGG ACGCGTTGCAGTGTGTTGATGAACTCCATCAAGCAGGGATTGATACAAGTGAATTTCCCTGGAGGTAA
AA sequence Show only first row Show all	>Lus10002010 pacid=23171877 polypeptide=Lus10002010 locus=Lus10002010.g ID=Lus10002010.BGIv1.0 annot-version=v1.0 MAFSFLTHFPPVTPKPSLFSLKPRILREPFLSLPKTHFFSRSRLHHPSAIGPDGKYYPSPSGEDPPEAPEDTSHGVNKFAQIQIQADRARKLQEEDFKKH ESTYLNALAETEDLPVSPDSNGGDDLFGEIDKAIALKREQSVKQGRLKPNPKKETVNDAGGGNEELEAEEVMDLKEIDELQGVKVTDSESDTDDEADGGD KVDDGFDIDFDIFGKKKVSIVEPMYRMTLAELLDDSKVVPVSVSGNLEVEITGIQHDSRLVTAGDLFVCCVGKKTDGHLYLSEADKRGAVAVVASKEIDI EETLGCKALVIVEDTSAILPALAAAFYRYPSKNMAVIGITGTNGKTTTAHLIKGLYEAMGLRTGMMSTVGYYLHSDIKLESPNTTPDAVLVQNLMAKMYH NGTEAVVVEASSYGLALGRCNEVDFDIAVFTNLTRDDSEFPGTDEEYRDAKAKLFARMVDPERHRKVINIDDPNAPYFMSLGNQNVPVITFAMDDKSADV HPLKFELSLFETCVLVNTPQGLLEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGTEEIDAVPGRCELIDEEQAFGVIVDYARTPAALSRLLDSVRE LGPKRIITVVGCCGETDRGKRPLMTKIATEKSEVTMLTSDNPKGEDPLDILDDMLAGVGWTMEEYLKHGANDYYPPLPNGNRLFLHDIRLVAVRCAVAMG EEGDVVVVTGKGHETYQLEGERKDLFDDREECRDALQCVDELHQAGIDTSEFPWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Lus10002010 [exp]	0	1
AT5G63630			P-loop containing nucleoside t...		Lus10004017 [exp]	1.0	0.9681
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	2.0	0.9551
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Lus10026514 [exp]	2.8	0.9537
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	3.0	0.9550
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10017378 [exp]	3.7	0.9459
AT1G30680			toprim domain-containing prote...		Lus10023379 [exp]	4.4	0.9384
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	4.9	0.9472
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10009521 [exp]	6.7	0.9526
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	7.5	0.9458
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10013801 [exp]	8.1	0.9417

Compare expression of checked genes

Lus10002010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.