Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035486 [exp] 715 / 0 ND / Lus10024633 [exp] 57 / 2e-08 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G103200 [exp] 103 / 3e-23 ND / Potri.003G128400 [exp] 90 / 7e-19 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002011 pacid=23171889 polypeptide=Lus10002011 locus=Lus10002011.g ID=Lus10002011.BGIv1.0 annot-version=v1.0 ATGGCCCCCAACTCAATAACTGGAGAGGAAAAACAGATATTCCAACATCAACAGACGCTTAGGAGGACCAATGAATCAGATTTGAGCCGCCCAACTGGTG AACCATCAGTGAAAAGGCCTAAACTGGATTCGTGCCTTGTTCCTGCTGACAATAGCGATGATGATGAGGACGAAGAAGAAGACGATGACAATGATGATGA TTATAATGATGATGCTGAGGCTAATAATGCTCAAGGAAAGGACGTCCCTAAGAAGGTGCGTAGGAGGAGCGCTACTAGGAAGCACAATGTAGCTAAGAAC AAAATGAAAAGGGTGGCTGCTGCTAGGAGAGCTAACCAGAGGAAAAGGGTGGCTTCAAATGCTGCTTCTGAGCAAGTTTCGCTAAACGAGCTGAAGAGTT ACATGAGCTCTCTGTTGGATGAAATGAAGGACACGAGAGGGAACCTCCTGACCTGGTTGAAGGAGGAGCTGAAGAAAACGATAGCCGAAGAGGTTACTTC GGAGCTGCAAAGGAGGCAACTCAGCTTCCACGTCAACAAGCAGAAAACTGGTAGCGTGGAGGACACTCGTGCCCTCAACACTTCCAAGAACAGGCAGGTG CAGCAAACTATGCAGCAGCAGTCGAATTTCGAGGAAAACAATCGAGTAAGGACTATCCAGGGAAGTATCAAACAGCAGCGGGTAAGCTCTTTCTGGTCAT CCAGAAGAGATGAGAACTGTGGTGTTGAGATTCCTCAGAGGTTTGCTAATAATAATAACAAGACGCCATCTGATGATGCCTACAACTTCATCAACCTAGA AACCGAGAATCCAAATGATGACAGCATGGCAACTCGGCCAACCACCCCAACAGAAAAGGCCACCAAAGGAATGTTGTTGTCAGTAAAATCGAATTCTCTA GTCCAAGATCAGCTGCAGCAAAAGAGAGCTCACCATACAACTAGTGGTTTGTCCAAAAGATATAGAGAAGGCAAAAGGGTCGTTGTTGACTCTGGTAATC ACTGTAACGTACCTCGAGGAAAAGAAGCCATTATTTCAGTGGCATCATCCACTGAAAACAAGCACAAAGCTACAAGGTCAGCATTCTGCGTGGAGCCAAA TTTCACTTGCAATCAAGCACCTCCTTCAATGTACTTAACATTGCCTAGTGTTCTGAACGGTGTTAATAGAAACCATAGGCCTGATGTTCCATCATTCACT AATGTTCAACCTAATAGATTTCCGGTGGTTGAAACAAGCCTCAACGGCGAAGGAACACCGAATTCAGGCAGTTACCTTGGATATTTGCAGAGGTTGATGC AGCAGCATGATGATGAAAGAAGCAGCAGAAGCTTTGCGCCAAGTGGTGATTTCAGGGACATGAGTTACTTGAGAAACAGCTATATGACGACATCTCCAAT TGCTGCTACTACTGTTGTTGGATTTCATCAGTCGTCTGAAATGGGTAACTTCAACACGCCACCAAGGCAACCGGGAATGGAAAGTCTGTCCCGCCAAATC AACTATGGCGTTGGCTTGAGGAATATTGGTGAGGAAGGCATGATGTTTTCAGGGGGAAGCTACTCTTTGCCAGTGCAGCATTTTCCTAACACCTTCCATT AA
AA sequence Show only first row Show all	>Lus10002011 pacid=23171889 polypeptide=Lus10002011 locus=Lus10002011.g ID=Lus10002011.BGIv1.0 annot-version=v1.0 MAPNSITGEEKQIFQHQQTLRRTNESDLSRPTGEPSVKRPKLDSCLVPADNSDDDEDEEEDDDNDDDYNDDAEANNAQGKDVPKKVRRRSATRKHNVAKN KMKRVAAARRANQRKRVASNAASEQVSLNELKSYMSSLLDEMKDTRGNLLTWLKEELKKTIAEEVTSELQRRQLSFHVNKQKTGSVEDTRALNTSKNRQV QQTMQQQSNFEENNRVRTIQGSIKQQRVSSFWSSRRDENCGVEIPQRFANNNNKTPSDDAYNFINLETENPNDDSMATRPTTPTEKATKGMLLSVKSNSL VQDQLQQKRAHHTTSGLSKRYREGKRVVVDSGNHCNVPRGKEAIISVASSTENKHKATRSAFCVEPNFTCNQAPPSMYLTLPSVLNGVNRNHRPDVPSFT NVQPNRFPVVETSLNGEGTPNSGSYLGYLQRLMQQHDDERSSRSFAPSGDFRDMSYLRNSYMTTSPIAATTVVGFHQSSEMGNFNTPPRQPGMESLSRQI NYGVGLRNIGEEGMMFSGGSYSLPVQHFPNTFH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002011 [exp]	0	1
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10035176 [exp]	1.0	0.9530
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10027459 [exp]	2.0	0.9407
					Lus10035486 [exp]	3.5	0.9235
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	3.9	0.9333
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	4.9	0.9318
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	5.9	0.9300
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10043080 [exp]	8.0	0.8988
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	8.8	0.9025
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	9.5	0.8963
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10041893 [exp]	9.5	0.8939

Compare expression of checked genes

Lus10002011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.