Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32330 137 / 2e-36 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G25480 119 / 3e-30 TPX2 (targeting protein for Xklp2) protein family (.1) AT2G35880 94 / 7e-21 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G28646 80 / 3e-17 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G23090 78 / 6e-16 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT1G54460 77 / 1e-15 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G04630 75 / 4e-15 WDL1 WVD2-like 1 (.1.2.3) AT1G70950 50 / 2e-06 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002915 [exp] 295 / 1e-97 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10029355 [exp] 94 / 7e-21 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10016193 [exp] 94 / 9e-21 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10021223 [exp] 81 / 8e-17 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10042543 [exp] 81 / 8e-17 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022003 [exp] 79 / 2e-16 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10005533 [exp] 79 / 3e-16 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 79 / 4e-16 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022213 [exp] 79 / 5e-16 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G027500 [exp] 136 / 3e-36 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.006G254400 [exp] 135 / 5e-36 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.016G066600 [exp] 92 / 4e-20 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G200400 [exp] 91 / 5e-20 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.005G055900 [exp] 86 / 1e-18 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G076200 [exp] 86 / 3e-18 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.008G162800 [exp] 85 / 4e-18 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.013G042800 [exp] 81 / 7e-17 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 59 / 3e-09 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.001G336300 [exp] 55 / 5e-08 AT3G27350 124 / 1e-31 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10002012 pacid=23166983 polypeptide=Lus10002012 locus=Lus10002012.g ID=Lus10002012.BGIv1.0 annot-version=v1.0 ATGCCGCCCAAATTTTTTTACCTCAGCAGTGGCGGCGGCGGCGCCTTTTCGTCGGTGAAGCGACGGCGGGGCGGCTGTCTGGTTGCGGCGACCTCCGGCG AGGACTACGACAGCTGCGAGATGTTTTTAAAGGTCCGTTTGAATGAGAGTGAGATGGATAAGGACGGTCATATGCTCAGTGATGGGTCTGAGATGGCTCA TCAAAATGGTGACCATGATTACAATGCGGTCTCTGGAGAGGTTGATGTTGTTTCAAGCAACATGAATGGAGCTGTGGGGAAAACATTGGAGCCTAAAGGT CCACATCAGTATGAAGAGAACGAACTGAAGTTGGATTTTGATGCTGTGACCATTGAAGATTCTGACGTTCCGATGGAAGTAGTCGGGGTGAAAGATACGG ATCACTCCGAGAAGGCACAATCGACAAAGGGTCTAGGAAAGAGCAAGAATGAGAAGCCTATGAACCAAAAGAAAGCATCAGGCACACAGCCGGTGAAGAG CAGAGATTCGAAAACAGTTGCCAATGGTACTCCTGCTCTGAATTCACGAGTAAAGCAAGTCCAGACCATGAAGGAATCTCAAGAAGCTGAGCTGAAGCAG CTGAGAAAGAGTTTGAACTTTAAGGCGACACCGATGCCTACCTTCTATCAGGAGCCTCCCCCACCCAGGACCGAGCTAAAGAAGATACCAACGACGAGGC CAAAGTCACCGAAGTTAGGTAGAAGGAAGAGCTCGCCGGGTGCTGATGCTGAAGGAAATAATACCAAGACGAATGGATCAGGTCGGTTAAGCATGGATGC TCGAGTGACTCAGACTACTACTACCTCTACCGCGAAGGATATCCCCCTTGTAGTTCCGAAGAAGCAACCTCGTAAGTCGCTCCCCAGACTTCCCTCTCAG AAGACCAGTTTGATCAAGAACAGCCCGAAAACCGCAGCCCCCAAACCAGAGAGTACAGCCTCCGAGTCGAAGCCAGAAGTGAACGAAACATGTCCCCCAC GAGCTAAGGTTAGCGAAGTCGAACCTGACGAAGAGCAAGACTTGGCCGAATCCAGTGTGCCGGAAGTGATAGAAGTGGAGCTTTAA
AA sequence Show only first row Show all	>Lus10002012 pacid=23166983 polypeptide=Lus10002012 locus=Lus10002012.g ID=Lus10002012.BGIv1.0 annot-version=v1.0 MPPKFFYLSSGGGGAFSSVKRRRGGCLVAATSGEDYDSCEMFLKVRLNESEMDKDGHMLSDGSEMAHQNGDHDYNAVSGEVDVVSSNMNGAVGKTLEPKG PHQYEENELKLDFDAVTIEDSDVPMEVVGVKDTDHSEKAQSTKGLGKSKNEKPMNQKKASGTQPVKSRDSKTVANGTPALNSRVKQVQTMKESQEAELKQ LRKSLNFKATPMPTFYQEPPPPRTELKKIPTTRPKSPKLGRRKSSPGADAEGNNTKTNGSGRLSMDARVTQTTTTSTAKDIPLVVPKKQPRKSLPRLPSQ KTSLIKNSPKTAAPKPESTASESKPEVNETCPPRAKVSEVEPDEEQDLAESSVPEVIEVEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002012 [exp]	0	1
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	2.2	0.9503
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10026663 [exp]	3.0	0.9267
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10026039 [exp]	3.7	0.9372
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10001675 [exp]	4.2	0.9299
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10002153 [exp]	4.5	0.9310
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021832 [exp]	6.6	0.9181
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10038765 [exp]	7.6	0.9144
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10022911 [exp]	7.7	0.9330
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	7.7	0.9299
AT1G72480			Lung seven transmembrane recep...		Lus10013162 [exp]	9.8	0.9268

Compare expression of checked genes

Lus10002012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.