Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32340 154 / 2e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 139 / 5e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G20190 135 / 9e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17940 110 / 2e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04530 87 / 1e-19 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 67 / 4e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT2G29670 67 / 4e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47080 55 / 3e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002914 [exp] 352 / 8e-123 AT4G32340 82 / 2e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002166 [exp] 139 / 4e-39 AT5G20190 192 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030103 [exp] 137 / 2e-38 AT5G20190 179 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019409 [exp] 124 / 1e-33 AT5G20190 164 / 1e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043266 [exp] 122 / 3e-33 AT5G20190 162 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024949 [exp] 107 / 3e-26 AT4G17940 125 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022877 [exp] 102 / 5e-25 AT4G17940 121 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014468 [exp] 100 / 1e-23 AT1G04530 177 / 1e-51 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000257 [exp] 100 / 2e-23 AT1G04530 179 / 3e-52 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254300 [exp] 161 / 5e-48 AT4G32340 157 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 136 / 7e-38 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130100 [exp] 134 / 5e-37 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 133 / 1e-36 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 113 / 2e-29 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G256900 [exp] 102 / 1e-24 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G172200 [exp] 92 / 1e-20 AT1G04530 137 / 1e-36 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G065400 [exp] 89 / 1e-19 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G250100 [exp] 67 / 4e-12 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G191600 [exp] 66 / 6e-12 AT2G29670 328 / 3e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002013 pacid=23166981 polypeptide=Lus10002013 locus=Lus10002013.g ID=Lus10002013.BGIv1.0 annot-version=v1.0 ATGCTTCTCCGGAGCTCCTCAACGCCGCTCATGAAGAATCTGGTCGGCCAATGGTGCGTCGCGCCTGAAATTGACGGGAGTTCCCCCACCTCTAAATATT CCCACGTCAGCCCTAAATTCTCCCCGCTCCGCCAGGCCGCCGTGCCTCTGAAACGGACGTCGTCCGAGGGGGATCTGAAATTCCTCCCTAAGACGGGGAA ATCGAAGCCGGCTAAGGAGTATTCGCAGCCTCCGCTGCCGTCTCCGCTGCAGCGGACGACTTCGGAAGGAGATCTGAAATTGACGGCTAGATACGTCAAC TCGGCGTTGGAAGACGCGGCGAGGAGCGTGATCGCCGCGGTGGTGGAGGAGGAGGGCATTGAGTTGGGGATTGGCGGAGATGGCGGCGGCGAAGGTAGGT TTCCGGTAGGCGGCGGAGGGGGATCATCTGGCGGCGGCGAGACGGAGCTGATGGACAAGTATTACAGGGATATGATTATAATGTATCCCGGCGACGAGCT TCTGCTATCGAATTACGCCAAGTTCCTGAAAGACGTCCGCGGCGACGATGTCAGGGCGGAGGAGTACTGCGAGCGTGCGATTGTGGTTAACGCCGGCGAT GGTGGCGTGCTGTCGATGTACGGCGATCTCATCTGGAATAACCATAAGGACGGTGGCCGCGCCAACACTTACTATAACCAGGCTGTTAAATCCGCTCCCG AAGACTGTAATGTGCTGGCATCGTATGCGCGATTCTTGTGGGACGTGGAGGAAGAGGCGGAGGAGGAAGAAGAAGAGGATGATCAGCAATTCCAGCAACT AGCCGGCGGTGGCAGGAGAATGAACCAGTCGCCGGCGTCGCTGAATATGGGGATTGGATTTGGAACCGAATTAGGATTCCGGCAGCTACTTCATGAAATG AATTGA
AA sequence Show only first row Show all	>Lus10002013 pacid=23166981 polypeptide=Lus10002013 locus=Lus10002013.g ID=Lus10002013.BGIv1.0 annot-version=v1.0 MLLRSSSTPLMKNLVGQWCVAPEIDGSSPTSKYSHVSPKFSPLRQAAVPLKRTSSEGDLKFLPKTGKSKPAKEYSQPPLPSPLQRTTSEGDLKLTARYVN SALEDAARSVIAAVVEEEGIELGIGGDGGGEGRFPVGGGGGSSGGGETELMDKYYRDMIIMYPGDELLLSNYAKFLKDVRGDDVRAEEYCERAIVVNAGD GGVLSMYGDLIWNNHKDGGRANTYYNQAVKSAPEDCNVLASYARFLWDVEEEAEEEEEEDDQQFQQLAGGGRRMNQSPASLNMGIGFGTELGFRQLLHEM N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32340			Tetratricopeptide repeat (TPR)...		Lus10002013 [exp]	0	1
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10033214 [exp]	2.8	0.7736
AT5G06130			chaperone protein dnaJ-related...		Lus10016993 [exp]	4.5	0.7677
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	6.0	0.7684
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10009886 [exp]	16.9	0.7790
AT1G08390			unknown protein		Lus10042503 [exp]	24.2	0.7271
AT5G39450			F-box family protein (.1)		Lus10037697 [exp]	27.1	0.6577
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	29.9	0.7429
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	35.2	0.7154
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	37.5	0.7272
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	43.4	0.7043

Compare expression of checked genes

Lus10002013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.