Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25490 694 / 0 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 603 / 0 EBF2 EIN3-binding F box protein 2 (.1) AT4G15475 150 / 1e-38 F-box/RNI-like superfamily protein (.1) AT5G27920 112 / 1e-25 F-box family protein (.1) AT5G23340 110 / 1e-25 RNI-like superfamily protein (.1) AT5G01720 97 / 8e-21 RNI-like superfamily protein (.1) AT3G58530 83 / 6e-17 RNI-like superfamily protein (.1) AT3G07550 76 / 2e-14 RNI-like superfamily protein (.1.2) AT1G77000 74 / 5e-14 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G80570 74 / 2e-13 RNI-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002913 [exp] 1061 / 0 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 617 / 0 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 610 / 0 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012764 [exp] 158 / 3e-40 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 134 / 2e-32 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10001264 [exp] 123 / 4e-29 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 115 / 3e-26 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 107 / 1e-24 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 106 / 2e-24 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254100 [exp] 806 / 0 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 800 / 0 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 671 / 0 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 671 / 0 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G105400 [exp] 120 / 3e-28 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 115 / 1e-26 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.016G128400 [exp] 114 / 2e-26 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 106 / 8e-24 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 103 / 1e-22 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.005G088800 [exp] 95 / 1e-20 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10002014 pacid=23166986 polypeptide=Lus10002014 locus=Lus10002014.g ID=Lus10002014.BGIv1.0 annot-version=v1.0 ATGTCTCAGCTCTTCGGATTTGCTGGAAGTGACGATTTTTACAGCTCAAACCCTAAGGATCAGAGCTTGTTCCTTCCACTTGGTCATCATGTTGATTTAT ACTATCCTTCCCGCAAGAGATCTCGTGTCACAGTACCGTTCCTCTTCAAGTTCGAGCAGAAGAAGCAGGCTTCCATCGATGTTCTTCCCGACGAGTGCCT CTTCGAAGTGTTCCGGCGCTTGGAGGGCCTAGAGAGGAGCGCTTCTGCTTGCGTTTCGAAGCGGTGGCTTGGTCTTCTGAGCAGCATTCGTAAGGAAGAA CTCGCTGTACCGCAAGCCGAGGTGGTTTCTGAATCTGCTGATGGTGGTTACCTCTCCAGGAGCTTGGAGGGGAAGAAGGCTACTGATGTTAAACTTTCGG CCATTGCGGTTGGAACCACGACTCGTGGAGGGTTGGGGAAGCTTTCGGTTCGCGGAGGAGGATGCAAGGTGACGAATTCGGGGCTTCGTGCGGTTGGTCG ATGCTGTGGTTCACTAAAGGTTCTGTCTTTATGGAATTTGACATCGGTTAGCGACGAAGGGTTGACTGAAATCGGGGAAGGATGCGGCCAGCTGGAGAAG CTCGATCTCTGTCAGTGTCCTGGAATCACTGACAAGGGTTTGAAGGCTATTGCGAGGAACTGTCCGAATCTGACCGATCTGACCATTGAGTCGTGTGTTA ACATTGGGAATGAAGGGCTCCAAGCGATTGGTCAGTCTTGTGTGAATCTAAAGTCCGTTTCTATTAAGAATTGTCCTGCTGTTGGGGATCAAGGGATTAG TGGACTGGTATCTTCGGCCTCCTCGTATTCTTTAATGAAGGTGAAGCTTCAAGCTTTGAACATCACTGATATGTCTCTAGCTGTGATCGGGCACTATGGG AAAGCTGTGACCGATCTTGTGCTATCCGTCCTTCCGAATGTTACCGAAAGAGGGTTTTGGGTAATGGGAAATGGACACGGGTTGCAGAAATTGAAGTCGT TCTCGGTTACTTCCTGCATCGGTGCCACTGATGCCGGGCTCGAGGCTGTGGCAAAAGGTTGTCCGAATTTGAAGCAGTTCTGTCTTCGTAAGTGTGCGTT CTTATCCGATAATGGATTGGTTGCTTTTGTCAAGAATTCGGCGACACTAGAGAGCATGCAATTGGAAGAGTGCCACAGGATCACCCAGTTCGGGTTTTTC GGTTCCCTTTTGAATTGTGGCACGAAGCTGAAAGCTTTTTCTCTGGTGAGTTGCTTGGGCATCAAGGATCTCGATGCTGGAGTGTCCGTGCCTTCGCCAT GCGAATCCCTTCGATCATTGTCAATCCACAACTGCCCCGGGTTTGGCGATGGTAGCTTGTCCTTTCTAGGGAAGCTGTGCCCTCAATTGCAGAATTTGGA ATTGACCGGTCTCCAAGGAGTAACCGATTCCGGTTTACTCGAACTACTCGTAAGCTGCAAGTCCGGTCTTGTGAAGGTCAACCTTAGTGGATGTGTCAAT TTGTCAGACAGGATCGTTATGGAGATGTCCGAGCACCACGGTTGGACCCTCGAGAAATTGAACCTTGAGGGATGTATCAAGATCACGGATGCGAGTTTAT CGGCTATTGCGAAAGGCTGTCTCTTGCTCAGTGATCTCGATGTCTCCAGATGCTCAATCACCGATGCTGGCATCGCATCCCTTGCTTCTTCCGGGTTGCT TGGTCTGCAAGTCTTCTCCATTTCCGGTTGCCACATGGTATCAGACAAGAGCTTCCAAAACCTAATGTTGCTGGGACAAACCCTTCTCGGGCTGAGCCTT CAGCACTGCAATGCAATCAGCAGCAGCACCGTCGAGCTTCTAGTGGAACGACTATGGAGGTGTGATGTGCTGTGTTAA
AA sequence Show only first row Show all	>Lus10002014 pacid=23166986 polypeptide=Lus10002014 locus=Lus10002014.g ID=Lus10002014.BGIv1.0 annot-version=v1.0 MSQLFGFAGSDDFYSSNPKDQSLFLPLGHHVDLYYPSRKRSRVTVPFLFKFEQKKQASIDVLPDECLFEVFRRLEGLERSASACVSKRWLGLLSSIRKEE LAVPQAEVVSESADGGYLSRSLEGKKATDVKLSAIAVGTTTRGGLGKLSVRGGGCKVTNSGLRAVGRCCGSLKVLSLWNLTSVSDEGLTEIGEGCGQLEK LDLCQCPGITDKGLKAIARNCPNLTDLTIESCVNIGNEGLQAIGQSCVNLKSVSIKNCPAVGDQGISGLVSSASSYSLMKVKLQALNITDMSLAVIGHYG KAVTDLVLSVLPNVTERGFWVMGNGHGLQKLKSFSVTSCIGATDAGLEAVAKGCPNLKQFCLRKCAFLSDNGLVAFVKNSATLESMQLEECHRITQFGFF GSLLNCGTKLKAFSLVSCLGIKDLDAGVSVPSPCESLRSLSIHNCPGFGDGSLSFLGKLCPQLQNLELTGLQGVTDSGLLELLVSCKSGLVKVNLSGCVN LSDRIVMEMSEHHGWTLEKLNLEGCIKITDASLSAIAKGCLLLSDLDVSRCSITDAGIASLASSGLLGLQVFSISGCHMVSDKSFQNLMLLGQTLLGLSL QHCNAISSSTVELLVERLWRCDVLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	0	1
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	1.4	0.8772
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	2.4	0.8701
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002913 [exp]	2.4	0.8586
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	3.9	0.8444
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10034931 [exp]	4.5	0.8230
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	4.9	0.8556
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	8.8	0.8407
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	8.8	0.8347
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10017356 [exp]	8.9	0.7963
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	9.9	0.8302

Compare expression of checked genes

Lus10002014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.