Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49500 1582 / 0 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT1G14790 568 / 0 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1) AT4G11130 524 / 3e-166 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT2G05370 129 / 1e-34 unknown protein AT2G19930 108 / 9e-24 RNA-dependent RNA polymerase family protein (.1) AT2G19910 97 / 6e-20 RNA-dependent RNA polymerase family protein (.1) AT2G19920 93 / 6e-19 RNA-dependent RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002910 [exp] 1657 / 0 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002909 [exp] 553 / 0 AT3G49500 333 / 3e-106 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10019164 [exp] 545 / 3e-174 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10042134 [exp] 489 / 5e-153 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002361 [exp] 317 / 2e-95 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10034262 [exp] 189 / 2e-52 AT1G14790 381 / 2e-123 RNA-dependent RNA polymerase 1 (.1) Lus10012965 [exp] 100 / 5e-21 AT2G19930 645 / 0.0 RNA-dependent RNA polymerase family protein (.1) Lus10034390 [exp] 76 / 5e-16 AT1G14790 147 / 2e-42 RNA-dependent RNA polymerase 1 (.1) Lus10034391 [exp] 47 / 6e-06 AT1G14790 87 / 3e-21 RNA-dependent RNA polymerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G253500 [exp] 1778 / 0 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.018G028100 [exp] 1748 / 0 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.010G105200 [exp] 609 / 0 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G136100 [exp] 598 / 0 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 596 / 0 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G135800 [exp] 591 / 0 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.015G073700 [exp] 541 / 3e-173 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.006G164400 [exp] 112 / 7e-25 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.007G081300 [exp] 112 / 1e-24 AT2G19930 868 / 0.0 RNA-dependent RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [flax] [poplar] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10002017 pacid=23166973 polypeptide=Lus10002017 locus=Lus10002017.g ID=Lus10002017.BGIv1.0 annot-version=v1.0 ATGGTGTTAGGGAATCAGAGTTGGCTTGAATCTCAGGAAGGGATGGATTCGGAAAGGAATGCTGCAGAGACGGTGGTAACTCAGATTAGCATCGGAGGAT TCGACAGTCATTGCAAAGCAGAAGATCTTAGGAAGTACCTGGAAGACAAGATTGGACAGGTTTGGCGTTGCAGACTGAAGACCTCATGGACCCCTCCGGA GTCCCATCCTAAATTCGACATCATCGAAGCAAACAGCATACAGATAACAGACACATACCTCCGAGTGGTGCCCCATGCATTCGTGCATTTCGCATTGCCA GATTCAGCTAGATCCGCCAAGGATGCTGCAATGAACGGTCAGCTATCGTTTCGTAGCGATGGACCTTTGCAGGTCAGTTTGGGTCCGGAAAACCCGTTCC GGCTCAACCAGAGAAGGAGAACTTCAACTCCTTTCAAGATCCCTAATGTGAAACTCGAAATTGGAAGCCTTGTTAGTCAGGAGCAGTTCTTTGTCAGTTG GAAAGGACCCGATTCAGGACTTGATTACTTGGTTGATCCTTTCGACGGTACGTGCAAGTTCTGCTTCACGAGGCAGACGTTCTTCTCGTTCAAAAACTCT CCCGACCATGTACTGCTCAATTGTGATTACAAGATGGAGTTCTTGGTTAGAGACATCCTGGAGATCAAACAGTACCAGGAGATGACTTGCTGGGTTATTC TTTTGCAGCTAGCTGCAGCCCCTCAGGTATGGTACAGAACTGCTGATGACGATATCGAAGCTATGGTACCGTGGGATTTATTAGACGACGATGACCCTTG GATCAGAACTACAGACTTCACAACTAGCGGCGCTATTGGCCGGTGCAACTTCTACAGAGTTTCTGTTCCGCCACGCCATGGCAACAAGTTAATAAAGGCC CTGAGTTTTCTCAAAGAACGAAGGGTGCAGGAAATTTCCCTCAGGAGACCACTTAAGATCCTGAACGAGCCGGAATTTGGGATGCCAATGTCAGATGTGT TCTTCTATATTCATGGCAAGGAAGGCGTCAGCTTCGACGAAATGTACCTGGTCAATGCTGTGGTCCATAGAGGGATATTTAGTCAACACCAGCTGTCTGA TGAATTCTTCACTATGTTGAGAAAGCAACCTGCGGAGATCAACGTTGCTGCTCTGAAGCAGATATGCTCGTACAAGCGGGCTGTGTTCGAAGCGTCTCAG GAGCTGGAAGCTGCCCGAAGGAGGATTTTGCAGAGCAATAATGCAATCAAGGTCAATACACGATTGGAAGACCTTGCTGAGATCAGAAGGTTGGTGATTA CTCCAACTAGAGCTTACTGTCTCCCTCCGGAGGTTGAGCTCTCCAATAGAGTGTTGCGGAAATACAAAGATGTGGGCAATAGGTTTCTGCGAGTAACTTT TATGGACGAGGGGTTCCAAACAATCAATTCGAGTGCGTTTTCGTATTATGTGGCTCCTATCGTGAGAGATATCACCTCTAACCCATTTCCTCAGAAGACC AGCATTTTCAAAAGGGTTCGAAGCGTCCTCACTGATGGATTTTACTTATGTGGCCGAAGATACACGTTCTTGGCTTTCTCGTCGAATCAGTTGAGAGATC GCTCTGCTTGGTTCTTCGCTGAGGATGGGAAGATAAACACGTTTGGTATAAGAGCTTGGATGGGTAAATTCAAAGACCGGAATATCGCCAAATGTGCTGC TCGGATGGGTCAGTGCTTTTCCTCTACATATGCCAGTGTTGAAGTTCCGTCATCTGAGGTCAACGAAGAACTCCCCGACATCAAGAGGAATGGTTACAAC TTCTCAGACGGGATTGGCATGATTACACCTGATCTCGCCCAGGAAGTTGCTATCAAGTTGAAGTTAGATGCTGATCCACCATGTGCATACCAGATTAGAT ATGCTGGTTGCAAAGGTGTTGTGGCTTGCTGGCCGGCACAGACAAATGGGGGGGCTCGTTTGTCTTTGAGGGAAAGCATGAACAAGTTTAGGTCAACTCA TACTACTTTGGAGATATGCTCGTGGACTAGATTTCAGGCAGGTTTCTTGAACAGGCAGATAATTACTCTGCTCTCAACGCTGGATGTTCCCGATACGGTC TTTTGGGAGATGCAGCAGCGGCAGCTGTCTAAACTGAACCGAATGCTCGTGGACAGCGACGTAGCATTCGATGTTCTCACTGCATCATGTGCCGAGCAAG GAACTGTTGCTGCACTTATGCTGAGTGCAGGTTTCGATCCTCGGTCCGAACCTCATCTAAGAGGTATGCTGACTTCCATAAGAGCTTCGCAGCTCTGGGG ACTGAGGGAGAAGTCCAGAATCTTTGTCCAAGGCGGGAGATGGTTAATGGGCTGCCTCGATGAACTAGCAGTGCTCGAGCAAGGACAGTGCTTCATTCAA GTCTCTAAACCATCTCTCCAGAACTGTTTCGTAAAGCACGGTTCAAAGTTTCAAGACACGAAGAAAGACCTTCATGTGGTCAAGGGAACCGTGGTGATTG CCAAGAATCCTTGCCTGCATCCGGGAGATGTGAGGGTGCTGGAAGCAGTTGATAAACCCGGTCTGCATCATCTGTACGATTGTCTCGTTTTCCCCCAGAA TGGCGAAAGACCCCATTCGAATGAGGCTTCTGGAAGTGATCTTGATGGTGACTTATATTTCATCACATGGGATGAAGATCTTATTCCTCCTAGCAAAAGG AGTTGGCCGCCCATGCAGTACGATGCTGCAGAGGCGAAAAAACTAAGTCGCGACGTGAACACTCAGGACATTATAGAGTTCTTTGTGAAGAACATGGTGA TTGAGAACTTGGGCGCAATCTGCAACGCTCACGTGGTTCACGCAGATCTTAGCGAGTACGGAGCTCTGGACGAAAAATGCATCACATTAGCAGAGCTGGC TGCAACAGCTGTTGACTTCCCGAAAACCGGGATGCTCGTGACAATGCCAGGACATCTCAAACCGAAGCTCTATCCAGACTTCATGGGGAAGGAGGATAAC CAGTCGTACGAGTCGAGGAAAATACTGGGCAGACTCTACCACCAGGTCAAAGATGCAGTTGACAATGAAGAATCTGCTGAATCGTCTGAGCTCAATCGTA CGATACTTTACGATGGCGATCTCAGCATCCTGGGAACGGCCGATTTCATCATGGAAGCGTGGGATCTGAAGTGCTCGTACGATAAGCAGCTGAGAGGGCT TCTTCAGCAGTATAAAGTGCAGAGGGAAGAAGAGATTGTTACGGGACACGTTTGGTCGATGCCCAAATCGAGCAGCAAGAAGCAGGGCGAGCTCAAGGAG CGGTTGAAGCACTCGTATAATTCGTTAAGGAAAGAGTTCCGGCAGATTTTCGAGAATTCGGGGGATGATGTGGCCCTCACGGAGGAAGAGAGGAATTCTG TGCTTGAGCGGAAAGCTGCAGCTTGGTATCAAGTTACTTATAATCCGAGATGGGCGAACCGGTCTCTGGAATTGGCAGGTGGTAGTTCTAATAATGGAGT CATGCTTAGTTTCCCGTGGATTGCGGCCGATTACCTTGCTCGGATAAAGGTTCGGAGTAGGGGACCGGGAACTGATGATCCGGGTAAACCGATTAACACT ATTCGGAGGTACCTTGCTGAGAGGATGTGA
AA sequence Show only first row Show all	>Lus10002017 pacid=23166973 polypeptide=Lus10002017 locus=Lus10002017.g ID=Lus10002017.BGIv1.0 annot-version=v1.0 MVLGNQSWLESQEGMDSERNAAETVVTQISIGGFDSHCKAEDLRKYLEDKIGQVWRCRLKTSWTPPESHPKFDIIEANSIQITDTYLRVVPHAFVHFALP DSARSAKDAAMNGQLSFRSDGPLQVSLGPENPFRLNQRRRTSTPFKIPNVKLEIGSLVSQEQFFVSWKGPDSGLDYLVDPFDGTCKFCFTRQTFFSFKNS PDHVLLNCDYKMEFLVRDILEIKQYQEMTCWVILLQLAAAPQVWYRTADDDIEAMVPWDLLDDDDPWIRTTDFTTSGAIGRCNFYRVSVPPRHGNKLIKA LSFLKERRVQEISLRRPLKILNEPEFGMPMSDVFFYIHGKEGVSFDEMYLVNAVVHRGIFSQHQLSDEFFTMLRKQPAEINVAALKQICSYKRAVFEASQ ELEAARRRILQSNNAIKVNTRLEDLAEIRRLVITPTRAYCLPPEVELSNRVLRKYKDVGNRFLRVTFMDEGFQTINSSAFSYYVAPIVRDITSNPFPQKT SIFKRVRSVLTDGFYLCGRRYTFLAFSSNQLRDRSAWFFAEDGKINTFGIRAWMGKFKDRNIAKCAARMGQCFSSTYASVEVPSSEVNEELPDIKRNGYN FSDGIGMITPDLAQEVAIKLKLDADPPCAYQIRYAGCKGVVACWPAQTNGGARLSLRESMNKFRSTHTTLEICSWTRFQAGFLNRQIITLLSTLDVPDTV FWEMQQRQLSKLNRMLVDSDVAFDVLTASCAEQGTVAALMLSAGFDPRSEPHLRGMLTSIRASQLWGLREKSRIFVQGGRWLMGCLDELAVLEQGQCFIQ VSKPSLQNCFVKHGSKFQDTKKDLHVVKGTVVIAKNPCLHPGDVRVLEAVDKPGLHHLYDCLVFPQNGERPHSNEASGSDLDGDLYFITWDEDLIPPSKR SWPPMQYDAAEAKKLSRDVNTQDIIEFFVKNMVIENLGAICNAHVVHADLSEYGALDEKCITLAELAATAVDFPKTGMLVTMPGHLKPKLYPDFMGKEDN QSYESRKILGRLYHQVKDAVDNEESAESSELNRTILYDGDLSILGTADFIMEAWDLKCSYDKQLRGLLQQYKVQREEEIVTGHVWSMPKSSSKKQGELKE RLKHSYNSLRKEFRQIFENSGDDVALTEEERNSVLERKAAAWYQVTYNPRWANRSLELAGGSSNNGVMLSFPWIAADYLARIKVRSRGPGTDDPGKPINT IRRYLAERM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002017 [exp]	0	1
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10002382 [exp]	4.2	0.7927
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10018580 [exp]	8.1	0.8095
AT2G32910			DCD (Development and Cell Deat...		Lus10004128 [exp]	9.4	0.7922
AT3G18310			unknown protein		Lus10023992 [exp]	16.2	0.7907
AT1G61690			phosphoinositide binding (.1)		Lus10007623 [exp]	17.1	0.7652
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	17.8	0.7995
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10027835 [exp]	17.9	0.7860
					Lus10004941 [exp]	18.4	0.7171
AT4G02720			unknown protein		Lus10022052 [exp]	19.1	0.7912
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10039811 [exp]	29.3	0.7868

Compare expression of checked genes

Lus10002017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.