Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26660 308 / 2e-105 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT5G20150 302 / 1e-103 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT5G15330 207 / 3e-65 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) AT2G45130 168 / 6e-51 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT1G63010 46 / 3e-05 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein AT4G11810 46 / 3e-05 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1) AT4G22990 45 / 3e-05 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002908 [exp] 563 / 0 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10030095 [exp] 322 / 5e-111 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10043272 [exp] 310 / 4e-106 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10019415 [exp] 301 / 1e-100 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10009314 [exp] 55 / 4e-08 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015852 [exp] 48 / 5e-06 AT4G22990 926 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10006340 [exp] 47 / 9e-06 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10021164 [exp] 43 / 0.0003 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10011799 [exp] 42 / 0.0004 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G253400 [exp] 414 / 4e-147 AT5G20150 308 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G028200 [exp] 400 / 8e-142 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.018G131500 [exp] 320 / 8e-110 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.006G069500 [exp] 319 / 2e-109 AT5G20150 359 / 8e-126 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.014G061400 [exp] 195 / 2e-61 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.002G143900 [exp] 194 / 5e-61 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.017G086600 [exp] 168 / 3e-50 AT5G15330 335 / 4e-115 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) Potri.001G193200 [exp] 164 / 3e-50 AT5G20150 158 / 2e-48 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.001G135950 [exp] 94 / 9e-24 AT2G45130 121 / 7e-35 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.003G120600 [exp] 47 / 7e-06 AT4G22990 1112 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Lus10002018 pacid=23166985 polypeptide=Lus10002018 locus=Lus10002018.g ID=Lus10002018.BGIv1.0 annot-version=v1.0 ATGAAGTTCTGGAAGAGTCTCAGCATATTGATCGAGGACACTCTGCCTGAATGGAGGGACAAATTCTTGTCCTACAAAGACTTAAAGAAGCAGCTGAAGC TGATTTACCCCAAGGACGGAGATAAGCCTCCGAGCAAGCGGTTGAAATCGGACGATCCGGCGGCGGATTGTAACGGGCGGGACAGTGGCGCCGTGACGAA GGAAGTGATCGATTTCGTCAGGCTCTTGGAGGATGAGATGGAGAAGCTGAATTCTTTTATCGTTGAGAAGGAAGAAGACTCTGTCATCAAGTGGAAGGAG TTGCAAGATGGGGTTGCAGAGGCCAAGGACTCGAAAGAAGAGCTGATGAGAATAGGCAGAGAGATCGTTGATCTACACGGGGAGATGATTTTGCTGGAGA ATTACAGTGCCCTTAACTATACAGGATTGGTGAAGATTCTGAAGAAGTACGACAAGAGAAGCGGCGCTCTACTCCGAGTCCCTTTCATTCGAAAAGTCAC GCAGCAACCCTTCTTCACTACTCACGTACTCAACAAGCTCGTCAAAGAATGCGAGGCAACTCTCGACAATATGTTCACACGTAACGAACCAACAGTACCT TCGTCCGAAGCATCAGCCAACGAGAACCAACAAGCTCAAAACTCCGACGAAACAGAGGAGAGGTCGTTCAGCACGGTGCCGAACGAGCTGAACGAGATCG AGAACATGGAGAGCATGTACGTGAAGCAGACCTTGTCGGCGCTGCGGGTGTTGAAGGAGATTCGGAGCGGGAGTTCGACGGTGAACATGTTCTCGTTGCC GCCGTTGCAGAGCCAGTCTCTGGAAGAAGATTGGAAGAAGCTCTCAGTGTTGGAACAAGCGGCCAAGTAG
AA sequence Show only first row Show all	>Lus10002018 pacid=23166985 polypeptide=Lus10002018 locus=Lus10002018.g ID=Lus10002018.BGIv1.0 annot-version=v1.0 MKFWKSLSILIEDTLPEWRDKFLSYKDLKKQLKLIYPKDGDKPPSKRLKSDDPAADCNGRDSGAVTKEVIDFVRLLEDEMEKLNSFIVEKEEDSVIKWKE LQDGVAEAKDSKEELMRIGREIVDLHGEMILLENYSALNYTGLVKILKKYDKRSGALLRVPFIRKVTQQPFFTTHVLNKLVKECEATLDNMFTRNEPTVP SSEASANENQQAQNSDETEERSFSTVPNELNEIENMESMYVKQTLSALRVLKEIRSGSSTVNMFSLPPLQSQSLEEDWKKLSVLEQAAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002018 [exp]	0	1
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10026986 [exp]	2.4	0.8393
AT4G17790			SNARE associated Golgi protein...		Lus10004564 [exp]	4.1	0.8541
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	5.3	0.8433
AT3G26100			Regulator of chromosome conden...		Lus10011399 [exp]	6.8	0.7843
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10041518 [exp]	7.6	0.7404
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10019349 [exp]	10.2	0.8095
AT5G19430			RING/U-box superfamily protein...		Lus10036034 [exp]	11.0	0.8002
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10039323 [exp]	11.4	0.8045
AT4G35750			SEC14 cytosolic factor family ...		Lus10041841 [exp]	11.4	0.8272
AT3G08890			Protein of unknown function, D...		Lus10002862 [exp]	12.7	0.8059

Compare expression of checked genes

Lus10002018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.