Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16080 218 / 6e-69 ATCXE17 carboxyesterase 17 (.1) AT1G19190 187 / 2e-57 alpha/beta-Hydrolases superfamily protein (.1) AT2G03550 178 / 1e-53 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 178 / 1e-53 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 177 / 3e-53 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 171 / 6e-51 ATCXE13 carboxyesterase 13 (.1) AT3G48690 161 / 4e-47 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 150 / 6e-43 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G49660 145 / 5e-41 ATCXE5 carboxyesterase 5 (.1) AT1G49650 145 / 3e-40 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002907 [exp] 632 / 0 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10017587 [exp] 212 / 2e-66 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10033548 [exp] 208 / 5e-65 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10036168 [exp] 187 / 3e-57 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042662 [exp] 186 / 8e-57 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10021745 [exp] 186 / 2e-56 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 175 / 2e-52 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10027909 [exp] 171 / 6e-51 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10009308 [exp] 171 / 1e-50 AT2G45600 340 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G028300 [exp] 455 / 2e-162 AT1G68620 199 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G253300 [exp] 394 / 1e-138 AT5G16080 173 / 9e-52 carboxyesterase 17 (.1) Potri.004G101400 [exp] 224 / 2e-71 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.017G113700 [exp] 222 / 2e-70 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.010G127600 [exp] 211 / 5e-66 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.008G118400 [exp] 192 / 8e-59 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G028400 [exp] 186 / 8e-59 AT1G68620 100 / 3e-25 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G155800 [exp] 181 / 2e-54 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G103800 [exp] 178 / 6e-54 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1) Potri.016G065000 [exp] 175 / 2e-52 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10002019 pacid=23166978 polypeptide=Lus10002019 locus=Lus10002019.g ID=Lus10002019.BGIv1.0 annot-version=v1.0 ATGTCATCATCAATTGTTGCGGAAGCACCGGGCTACCTACAAGTCTTCTCCGACGGTTTAGTCAAACGCTTAATTCCGGAGTCAGTCCCTCCCTCGGAGG ACTCCTACGCTGACGGATTCAAGTTCAAGGACATCACAATCGATCCATCCAAGCCAATAACCGCCAGAATGTTTATCCCTGATGATGATCAAGCTCACCT CCTCCCCGTTTTGGTCTACTTTCACGGTGGCGGATTTTGCATGGGTTCGACCACTTGGTTAGGTTACCATCACTTCCTTGGTGACTTGTGTGCCAAGTCT CACTGCATTATCCTCTCTGTAGACTACCGCCTAGCCCCAGAGAACCGCCTCCCAGTGGCGTACGAGGATTGTTACGCCTCGCTCGAATGGTTGAGCCAAC AAGTGATCAATATGAGTTCAGAAGAACCTTGGCTTCGAGTAGCTGACCTATCTCGAGTCTTCTTGTCGGGAGACAGTGCTGGAGCCAACATCTCGCACCA TGTTGCCATCAAAGTGTCATCAAGGAACAACCCGGTACAAAATGTGAGCATCAAAGGACTCTTGATGATTCATCCTTATTTCGGAAGCGAATCGAGAACT ACAAAAGAGGCGATGGATGACAGCTCAACGGATGATGTGAAGATGAATGACTTGTTCTGGAAGCTAAGCATACCAGAAGGGTCGAACCGCGATTACTATG GCTGTAACATCGAGAAACAAGATGTTTCAAATGCTGAATGGAGTGAATTCCCTGCTGTAACCGTGTACGTTGCTGGCCTGGATTTCTTGAAGGAAAGGGG AGTCATGTATGCAGAGTTCTTGGCTAGGAAAGGAGTTAAGGAAGTGACGGTAATCGAAACCGACAACCAGCCACACATCTTCCATGTGTTCGATCCGAAA TCGGATGAAACTCGATTGCTCCAGAGTCAGATGAGCAAGTTCATGGAGATTCATTAG
AA sequence Show only first row Show all	>Lus10002019 pacid=23166978 polypeptide=Lus10002019 locus=Lus10002019.g ID=Lus10002019.BGIv1.0 annot-version=v1.0 MSSSIVAEAPGYLQVFSDGLVKRLIPESVPPSEDSYADGFKFKDITIDPSKPITARMFIPDDDQAHLLPVLVYFHGGGFCMGSTTWLGYHHFLGDLCAKS HCIILSVDYRLAPENRLPVAYEDCYASLEWLSQQVINMSSEEPWLRVADLSRVFLSGDSAGANISHHVAIKVSSRNNPVQNVSIKGLLMIHPYFGSESRT TKEAMDDSSTDDVKMNDLFWKLSIPEGSNRDYYGCNIEKQDVSNAEWSEFPAVTVYVAGLDFLKERGVMYAEFLARKGVKEVTVIETDNQPHIFHVFDPK SDETRLLQSQMSKFMEIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	0	1
					Lus10013654 [exp]	2.0	0.9669
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042106 [exp]	4.2	0.9383
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	5.1	0.9669
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	6.9	0.9647
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	7.7	0.9442
AT1G30800			Fasciclin-like arabinogalactan...		Lus10038414 [exp]	9.2	0.8830
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	9.4	0.9609
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	10.5	0.9587
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	11.5	0.9587
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	11.6	0.8960

Compare expression of checked genes

Lus10002019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.