Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11170 761 / 0 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G11200 761 / 0 DEAD/DEAH box RNA helicase family protein (.1.2.3) AT2G45810 244 / 3e-74 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 241 / 2e-73 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT4G00660 238 / 2e-72 ATRH8 RNAhelicase-like 8 (.1.2) AT1G72730 229 / 5e-70 DEA(D/H)-box RNA helicase family protein (.1) AT3G13920 228 / 6e-70 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 222 / 3e-67 EIF4A-2 eif4a-2 (.1.2) AT3G19760 216 / 3e-65 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G51380 208 / 2e-62 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014260 [exp] 813 / 0 AT5G11200 794 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10025960 [exp] 807 / 0 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1) Lus10002905 [exp] 364 / 5e-121 AT5G11200 423 / 5e-145 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10017804 [exp] 243 / 3e-74 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10014783 [exp] 239 / 9e-73 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 236 / 2e-71 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017407 [exp] 215 / 2e-64 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 208 / 6e-62 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10006878 [exp] 206 / 6e-61 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G253100 [exp] 795 / 0 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.018G028600 [exp] 793 / 0 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.002G157500 [exp] 242 / 6e-74 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 238 / 2e-72 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.001G197900 [exp] 229 / 4e-70 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.005G093900 [exp] 228 / 1e-69 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.018G061050 [exp] 228 / 1e-69 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 228 / 2e-69 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 226 / 9e-69 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.007G070000 [exp] 225 / 1e-68 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10002021 pacid=23166980 polypeptide=Lus10002021 locus=Lus10002021.g ID=Lus10002021.BGIv1.0 annot-version=v1.0 ATGGGAGAAACAAGAGACAACGATTATGAGGAAGAGCTTCTCGATTACGAGGAAGAGGAGGAGAAAGCCCCAGACTCCGTCACTGCTAAAGTCAACGGCG AAGCTCCCAAGAAGGGATATGTTGGGATACACAGTTCGGGATTCAGAGACTTCCTTTTGAAGCCAGAGCTACTTCGGGCTATTGTAGATTCTGGGTTTGA GCATCCTTCCGAAGGCAAGTTTCTGACTTTGGTAATAATTCACTATCATAATCTTGGTTTTGGAGCACTATTCTGGTTTGGTTGCCTTTCAATTAGCGGA CATGAAGGTATGTGTACTTACGAGGGGATCCTCGGTCCAATTTTCTTTCGTTCTTCATCAGTGCAACATGAGTGTATTCCCCAAGCCATCTTGGGAATGG ATGTCATCTGCCAAGCTAAGTCTGGTATGGGAAAGACTGCTGTCTTTGTTCTGTCTACTCTCCAGCAAATTGAGCCAACTTCAGGGCAGGTTATTGCCCT TGTTCTGTGTCACACAAGAGAACTTGCTTACCAGATCTGTCACGAGTTTGAGAGGTTCAGTACCTACTTGCTGGATACCAAGGTTGCTGTATTTTATGGC GGTGTCAACATCAAAACTCACAAGGATCTTCTGAAAAATGAATGCCCTCACATTGTCGTTGGAACACCTGGTAGAATATTGGCATTGGCACGAGACAAGG AACTATCACTGAAAAATGTGAGACATTTCATTCTTGATGAATGTGACAAGATGCTCGAGTCCCTTGATATGAGGAGAGATGTGCAGGAGATCTTCAAGAT GACCCCTCACGACAAGCAAGTCATGATGTTCTCTGCAACACTCAGTAAAGAAATCCGCCCAGTATGCAAGAAATTCATGCAAGATCCGATGGAAATCTAT GTTGACGATGAGGCCAAGTTGACACTTCATGGACTTGTACAGCACTACATCAAATTGACCGAGCTGGAGAAAAACCGGAAGCTGAATGACCTTCTTGATG CTCTGGACTTCAATCAAGTTGTTATCTTTGTCAAAAGTGTAAGCCGAGCTGCTGAGCTGAACAAGTTGCTGATCGAGTGTAATTTCCCTTCGATATGCAT CCACTCGGGCATGTCCCAGGAGGAAAGGCTGACACGCTACAAGGGTTTCAAAGAGGGCCATAAAAGGATTCTCGTGGCCACCGATCTGGTTGGAAGGGGA ATCGACATTGAGCGGGTCAACATTGTTATCAACTATGACATGCCTGATTCAGCCGACACATATCTTCACAGGGTTGGTCGTGCGGGTAGGTTCGGAACAA AGGGTCTTGCAATTACGTTTGTTTCATCAGCTTCAGACTCAGATGTTCTCAATCAGGTTCAGGAGAGGTTTGAGGTTGACATTAAAGAACTTCCTGAGCA AATCGACACTTCAACATACAGTAAGTTCCTACCGTACCTCCTTCATTTGTTAAACAACCAAAGAAAGTGCTCTGCATCATTGATTGACTTGTTTTGA
AA sequence Show only first row Show all	>Lus10002021 pacid=23166980 polypeptide=Lus10002021 locus=Lus10002021.g ID=Lus10002021.BGIv1.0 annot-version=v1.0 MGETRDNDYEEELLDYEEEEEKAPDSVTAKVNGEAPKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFLTLVIIHYHNLGFGALFWFGCLSISG HEGMCTYEGILGPIFFRSSSVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALVLCHTRELAYQICHEFERFSTYLLDTKVAVFYG GVNIKTHKDLLKNECPHIVVGTPGRILALARDKELSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY VDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLIECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRG IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYSKFLPYLLHLLNNQRKCSASLIDLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	0	1
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10040218 [exp]	1.0	0.9419
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10030190 [exp]	1.7	0.9369
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	2.0	0.9360
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	3.2	0.9403
AT2G32415			Polynucleotidyl transferase, r...		Lus10015114 [exp]	3.9	0.9351
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10008728 [exp]	4.5	0.9267
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10009236 [exp]	4.8	0.9114
AT1G30240			unknown protein		Lus10026071 [exp]	4.9	0.9298
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	4.9	0.9103
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10010845 [exp]	5.7	0.9215

Compare expression of checked genes

Lus10002021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.