Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64870 241 / 2e-78 unknown protein AT3G45200 240 / 4e-78 unknown protein AT5G11220 197 / 8e-62 unknown protein AT1G49290 132 / 8e-36 unknown protein AT5G13620 120 / 1e-31 unknown protein AT5G24355 76 / 4e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041678 [exp] 501 / 2e-180 AT1G64870 237 / 6e-77 unknown protein Lus10009296 [exp] 449 / 2e-160 AT1G64870 235 / 3e-76 unknown protein Lus10002905 [exp] 130 / 5e-34 AT5G11200 423 / 5e-145 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10021560 [exp] 103 / 2e-25 AT1G49290 125 / 4e-33 unknown protein Lus10017168 [exp] 99 / 1e-23 AT5G13620 125 / 6e-33 unknown protein Lus10041424 [exp] 69 / 4e-13 AT1G49290 90 / 7e-21 unknown protein Lus10036502 [exp] 65 / 2e-12 AT1G49290 84 / 1e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252800 [exp] 303 / 3e-103 AT1G64870 261 / 6e-87 unknown protein Potri.010G216400 [exp] 163 / 1e-47 AT1G64870 167 / 3e-49 unknown protein Potri.008G045000 [exp] 156 / 7e-45 AT5G13620 172 / 9e-51 unknown protein Potri.001G155600 [exp] 97 / 4e-23 AT5G13620 92 / 3e-21 unknown protein Potri.014G054900 [exp] 82 / 9e-18 AT1G64870 91 / 4e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002022 pacid=23166969 polypeptide=Lus10002022 locus=Lus10002022.g ID=Lus10002022.BGIv1.0 annot-version=v1.0 ATGGATTCCCCTGCAATCACACAAGAGCAACTATACGCCTTCCACTCTGCCGATAGGGAAGTGTTCTCTCGAATGGTAATAAACCTTATGCGCGACCCTG GCGAGTCCTTGATCGTCGTAGCTGCCTGGCTATGGTTGGAGCAGATAGGGTATCCTAACATCATCCTTTTGATGGCATGCCTCTCTGACTCTGTCATCGA AATCCTTGCTCACGAGATGGCTGTGACACTGGACTCCCTCAAGTACTCCGTCGAAGACCTCTCGTCTGATGGCGGCCAGTTAATGCCCGCCACCTCAGCA ATCATGTCCGAAAACATCACCGCAGAGGTCTTCCACCGCCAACGCTTTACTACCATTGTCGGGATCAAGAACTTCCTCAACACAGTCTGCGCCCGAGTGT TCGGTGACATCTTACATCCCCTCTGCAAGGTATCTACTTCGACTGGGGAGCTGGGAACCACACAACTAGTGATTCCTAAGTTCCCCCACCCTTTATTTGG GGGCGTGACCATCACACCCCCAATCTACAGGCTCTGGTACCAGCAGGGACGAAACGGAATCGACGGTTTCGTCCCTGCAGGAGGGTTGTGGGAGTGGGCA CCTACCAACAACGCCACCGAGGACGACAAGACGTTGTTCCTAACTTTTTCAAGGGGATTCCCGGTTACAAAAGAGGAGGTGGTGGAACTATTTACGCGGA AGTACGGGGAGGGGAGTGTGATCGGGGTCATGATGCAAGAGAACGTGGTCACCTGTGGAGACCAACAACCGCTTTTTGCGAGGATGATGATGAGTTCGGT CACCGTGGTGGATCGGGTGCTCGGTGGGGGTAGGATTGCCAAGTTCCGGATCAACGGAAAACACATATGGGCCCGGAAGTATGAGAGGAGGGAACAAATG TCGATGTCAACGATGATTTCACCTCCGCCAGTCTAA
AA sequence Show only first row Show all	>Lus10002022 pacid=23166969 polypeptide=Lus10002022 locus=Lus10002022.g ID=Lus10002022.BGIv1.0 annot-version=v1.0 MDSPAITQEQLYAFHSADREVFSRMVINLMRDPGESLIVVAAWLWLEQIGYPNIILLMACLSDSVIEILAHEMAVTLDSLKYSVEDLSSDGGQLMPATSA IMSENITAEVFHRQRFTTIVGIKNFLNTVCARVFGDILHPLCKVSTSTGELGTTQLVIPKFPHPLFGGVTITPPIYRLWYQQGRNGIDGFVPAGGLWEWA PTNNATEDDKTLFLTFSRGFPVTKEEVVELFTRKYGEGSVIGVMMQENVVTCGDQQPLFARMMMSSVTVVDRVLGGGRIAKFRINGKHIWARKYERREQM SMSTMISPPPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64870			unknown protein		Lus10002022 [exp]	0	1
AT1G17930			Aminotransferase-like, plant m...		Lus10033415 [exp]	1.0	0.9580
AT5G38460			ALG6, ALG8 glycosyltransferase...		Lus10033554 [exp]	3.9	0.7210
AT5G02280			SNARE-like superfamily protein...		Lus10023793 [exp]	5.2	0.6842
AT5G46795		MSP2	microspore-specific promoter ...		Lus10000907 [exp]	5.8	0.7198
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10039330 [exp]	7.9	0.6668
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	9.1	0.7981
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	11.1	0.7981
					Lus10013299 [exp]	12.0	0.6824
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	12.8	0.7981
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	13.2	0.7953

Compare expression of checked genes

Lus10002022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.