Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56310 343 / 1e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 328 / 1e-106 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 329 / 2e-106 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 327 / 2e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 318 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G40405 316 / 4e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 312 / 2e-100 MEF21 mitochondrial editing factor 21 (.1) AT1G59720 304 / 3e-96 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 301 / 2e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 300 / 1e-94 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005207 [exp] 325 / 4e-104 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013319 [exp] 322 / 7e-104 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10010385 [exp] 321 / 9e-103 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 318 / 6e-102 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 313 / 7e-100 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 313 / 2e-99 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027389 [exp] 306 / 1e-98 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025490 [exp] 308 / 4e-98 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 307 / 1e-97 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252400 [exp] 529 / 0 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G168800 [exp] 354 / 5e-116 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G223900 [exp] 341 / 9e-112 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G034900 [exp] 337 / 1e-110 AT4G21065 370 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.017G001000 [exp] 332 / 3e-107 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G065500 [exp] 325 / 1e-104 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G073100 [exp] 321 / 5e-104 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G135400 [exp] 322 / 2e-103 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 318 / 1e-100 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 315 / 1e-100 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10002024 pacid=23166988 polypeptide=Lus10002024 locus=Lus10002024.g ID=Lus10002024.BGIv1.0 annot-version=v1.0 ATGCAAGTGGAGGCCGCCGTGGCTCGACTACTCCGGGCGGCGGTCGTCGTCAACGAGAGGGCGGCGGAGCAGAACTGCCTCGCCGTGCTTCACTCCTGCG ACGGTTTCCCCAAGCTGAATCAAATTCAAGCCAGTATTATCAAAGCGGGACTGACGAATAATCCATTGGTTCTCACCAAGTTCGCTTCTACATCAGCTGA TCTTGAAGCAATCGATTACGCTACCTCCTTCTTATTCTCTCCGGAATCCGATACTCGTCTCTACGATGCCTTCCTCTTTAATACAGTCATCAGATCCTAC GCGCGGAGGAGCGTCGATTCAAAGGCCGGAGCTTTATCTATGTACCGTCTAATGCTCGATTACGGCGTTCTCCCCAATAGGTACACGTTTCCATTTGTTC TCAAGGCCTGTTCAGGGATCGGGGATTTGAAATTGGGGGAATCGGTTCATGGGTCGGTTTTCAAGCTCGGATTCGACGATGATATCCATGTCCGGAACAC TTTGATCCACATGTACTGCTGTGGAGACCACAAAGGAATCGGCTTTGCACGCCGAGTGTTCGACGAAATGCCAAAGTCGGATTGTGTTACTTGGAGCGCA ATGATCGGTGGATACGCTCGGTTGAAGATGTCCACCAATGCGATTCAGTTGTTCCGGAAGATGCAGAGTGATAAAATCCGTCCTGATGAGATCACCATGG TTGCTGTTCTCACTGCCTGTACGGATTTGGGCTCGCTTGAGCTAGGGAGATGGATTGAATCCTGCATTGAGGAAGAAAGGATCGAGAAAAGTAGCGAACT TTATAACGCATTGATCGACATGTTTGCAAAATGTGGAGATGTCGATCGAGCTATCGAGATTTTCCGGAGCATGGACGGCAATTATACAACTATAATCTCA TGGACTTCAGTGATTGTGGGGCTAGCCATGCACGGACGTGGAATGGAAGCTCTTGCTTTGTTTGAAGAGATGGTTGCAAATGGCGTGAAACCAGACAGAG TCGTCTTCATAGCGTTGATCTCGGCTTGCACTCATTCGGGACTAGTCGATCAAGGGAAGGAATGTTTCGATTCGATGAAGGGGAGGTTCGGTATGGAACC GAAAATCGAGCATTATGGATGTATGGTTGATTTGTTTTGCAGGGCGGGGATGATTAAAGAGGCGTTTGAGTTTGTTCGAGAGATGCCGGTTGAGCCGAAC CCGATCATTTGGCGGACTCTGATCAATGCCTGTCGATGTAATGGAGAATTGAAGCTCGGAGAGGAGATTAGTGCAGAGCTTATCAGGAATGATCCGAAGT ACGAGTCCAACTATGTGATGCTTTCGAACATTTATGCGAAAATGTCGGAGTGGGAGAAGAAGAGGAGTGTTCGAGAGGCGATGGATGTGCAGGGAATGCG GAAGATTGCTGGAAGTACTAAGATTGAGTTGGAACATAATTCGAATTCAACTCAAATTGGACTCGTCGAGAGGTTTTAA
AA sequence Show only first row Show all	>Lus10002024 pacid=23166988 polypeptide=Lus10002024 locus=Lus10002024.g ID=Lus10002024.BGIv1.0 annot-version=v1.0 MQVEAAVARLLRAAVVVNERAAEQNCLAVLHSCDGFPKLNQIQASIIKAGLTNNPLVLTKFASTSADLEAIDYATSFLFSPESDTRLYDAFLFNTVIRSY ARRSVDSKAGALSMYRLMLDYGVLPNRYTFPFVLKACSGIGDLKLGESVHGSVFKLGFDDDIHVRNTLIHMYCCGDHKGIGFARRVFDEMPKSDCVTWSA MIGGYARLKMSTNAIQLFRKMQSDKIRPDEITMVAVLTACTDLGSLELGRWIESCIEEERIEKSSELYNALIDMFAKCGDVDRAIEIFRSMDGNYTTIIS WTSVIVGLAMHGRGMEALALFEEMVANGVKPDRVVFIALISACTHSGLVDQGKECFDSMKGRFGMEPKIEHYGCMVDLFCRAGMIKEAFEFVREMPVEPN PIIWRTLINACRCNGELKLGEEISAELIRNDPKYESNYVMLSNIYAKMSEWEKKRSVREAMDVQGMRKIAGSTKIELEHNSNSTQIGLVERF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56310			Pentatricopeptide repeat (PPR)...		Lus10002024 [exp]	0	1
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10006769 [exp]	2.8	0.8097
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10001213 [exp]	7.3	0.7759
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	13.3	0.7712
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	13.6	0.7839
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10026570 [exp]	15.3	0.7493
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10016943 [exp]	20.0	0.7656
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10024025 [exp]	20.1	0.7707
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10029934 [exp]	21.0	0.7379
AT1G08410			P-loop containing nucleoside t...		Lus10013359 [exp]	21.0	0.7074
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021068 [exp]	23.2	0.7543

Compare expression of checked genes

Lus10002024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.