Plant FIBer expression Database

Lus10002025 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25530 795 / 0 AFG1-like ATPase family protein (.1)
AT4G30490 174 / 2e-47 AFG1-like ATPase family protein (.1)
AT4G28070 162 / 2e-43 AFG1-like ATPase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015485
[exp]
166 / 6e-43 AT2G23890 790 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Lus10019962
[exp]
152 / 2e-38 AT2G23890 859 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1)
Lus10002903
[exp]
64 / 1e-11 AT1G74400 105 / 2e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G252300
[exp]
811 / 0 AT2G25530 777 / 0.0 AFG1-like ATPase family protein (.1)
Potri.018G100900
[exp]
177 / 2e-48 AT4G28070 713 / 0.0 AFG1-like ATPase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF03969 AFG1_ATPase AFG1-like ATPase
Representative CDS sequence
>Lus10002025 pacid=23166971 polypeptide=Lus10002025 locus=Lus10002025.g ID=Lus10002025.BGIv1.0 annot-version=v1.0
ATGGCGAAGAATGTTTGGTCGTTTGGGGGGAAAATGAGGAGAGTCTATTCAATTTCTTCTTCGATTGCGCGATTAGGCCTTCGTAGGACGAGAGTACTTT
CAAGCACTTTCGGATTCAATGCTCGGGCTTTTTGTGATCCTTCTTCCAGTATTGCGTCTCCGAAGCCTCAAGGCCCATTGGCGCGGTACAGGGATTTCGT
CGGGGAAGGCAAGCTGCAGCATGATCCGTACCAGGAGAGAGTTGCTATTGAATTGGAGAAGCTACTCGGGAGATTGGAACAATATGAGAGAGATATGGAG
GAATATCATGCGAAGTTAGCCAAATGGGAGGCGGACAGGGAGAACGAACGGCGGAAGCTTATGACGAATGAAGCCGAACAAAAGCAAGATGGGGGGAAAC
AGTCCATCAAACTTGTTGAAAGATGGATGTTCGGAAAGAGACCTGAAAATGTAGAGTCTGGAGTGGGGAAATGGGTCTCGTACCTGAATAGAGAACGGAA
GCTGGATTCGGTCGTTGGTCGCCGTCCAACTCCTCCTGCAGCACCCAGAGGACTCTATATATATGGCAATGTTGGGAGTGGGAAGACAATGCTGATGGAT
ATGTTCTATGGCGCTACGGCAGATGTTGTCAAACATCGAAGAAGATTTCACTTCCACGAGGCGATGCTGAATATAAATGAGCATATGCATAAGATATGGA
AGAATCAAGTGGAGGAGAAGCCGTTTCATTCAAGTGTGTCGAGTTGGATTATGAATTTGCCCTTTGATATCAAAGTTAAGGAGTGGTTAGCTTCCGAAGA
GAAATATAAGAAAGATATGCAGATGAAACACATTCTTCCTGCTGTAGCTGACCGGTTTCTTATCGACCAGCAAACTGGTCAACGGGGTGCCAGTATTCTC
TGCTTCGACGAGATTCAGACTATAGATGTATTTGCTATTGTAGCCTTATCTGGAATTCTGGGGAGATTGTTAGCTACTGGTACTGTTCTTGTTGCTACCA
GTAACCGAGCACCGAAGGATCTAAATCAGGATGACATGCAACGAGAAATCTTCCATAAATTACTTACCAAAATTGAAGAGCACTGTGAAACTGTATTGAT
TGGGAGTGAGATTGATTATCGCCGTTTCGCAGCTCAGAGATGTGAAAATCAGGTTCGTTATTTCTGGCCATTGGAAAGCAGTGCTATGAATGAGTATGAA
AAAACGTGGTCTCAACTGACCGAACCCAGCCAAATCACATCTACTACAATTCCTGTTATGTTTGGGAGAAAACTAGAAGTTCCTGAAAGTTGCAGAGGTG
TTGCAAGATTCTCGTTTGAGCATCTATGTGGCCGGCCGTTGGGTGCAGCAGATTATATTGCTGTAACGAGAAATTACCACACCGTTTTCATCTCAGATAT
TCCAGCAATGAGTATGAGAATCCGTGACAAGGCACGTAGGTTTATTACCCTAGTCGATGAGTTATACAACCACCATTGCTGTCTGGTGTGTTCTGCAGCA
GCTTCTATTGAAGACTTGTTCCAAGGAACTGAAGAGGGTACCCTGTTCGATTTGGAAAGTTTTCAATTTGAAACAGAGATAGAAGGTGGGAAACTCAGAA
GAGATGTGTTAGCCGAGGGGAAAGTGGGAGATGGAGGTGCCCCATCTGGGATTATATCGATGCTATCCGGTCGAGAAGAAGGCTTTGCATTCCGAAGAGC
AGTTTCACGGCTGATCGAGATGCAGACGCCTTTGTACCAGGAAGGAGTCCGGACACTTCACCCCTACTTCCAGACTCAGGTTGGTTACGGAAGTTCCGGC
AGCACTTTACGGCCTCAGGTTTCGACATAA
AA sequence
>Lus10002025 pacid=23166971 polypeptide=Lus10002025 locus=Lus10002025.g ID=Lus10002025.BGIv1.0 annot-version=v1.0
MAKNVWSFGGKMRRVYSISSSIARLGLRRTRVLSSTFGFNARAFCDPSSSIASPKPQGPLARYRDFVGEGKLQHDPYQERVAIELEKLLGRLEQYERDME
EYHAKLAKWEADRENERRKLMTNEAEQKQDGGKQSIKLVERWMFGKRPENVESGVGKWVSYLNRERKLDSVVGRRPTPPAAPRGLYIYGNVGSGKTMLMD
MFYGATADVVKHRRRFHFHEAMLNINEHMHKIWKNQVEEKPFHSSVSSWIMNLPFDIKVKEWLASEEKYKKDMQMKHILPAVADRFLIDQQTGQRGASIL
CFDEIQTIDVFAIVALSGILGRLLATGTVLVATSNRAPKDLNQDDMQREIFHKLLTKIEEHCETVLIGSEIDYRRFAAQRCENQVRYFWPLESSAMNEYE
KTWSQLTEPSQITSTTIPVMFGRKLEVPESCRGVARFSFEHLCGRPLGAADYIAVTRNYHTVFISDIPAMSMRIRDKARRFITLVDELYNHHCCLVCSAA
ASIEDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGKVGDGGAPSGIISMLSGREEGFAFRRAVSRLIEMQTPLYQEGVRTLHPYFQTQVGYGSSG
STLRPQVST

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G25530 AFG1-like ATPase family protei... Lus10002025
[exp]
0 1
AT5G02270 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRI... Lus10023792
[exp]
1.4 0.8576
AT5G64290 DCT, DIT2.1 dicarboxylate transport 2.1 (.... Lus10003967
[exp]
6.5 0.8551
AT4G14930 Survival protein SurE-like pho... Lus10004909
[exp]
11.3 0.8402
AT5G16760 AtITPK1 inositol \(1,3,4\) P3 5/6-kina... Lus10038765
[exp]
13.3 0.8547
AT1G63000 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-... Lus10006719
[exp]
20.8 0.8494
AT3G12110 ACT11 actin-11 (.1) Lus10004956
[exp]
25.8 0.8485
AT5G19760 Mitochondrial substrate carrie... Lus10007883
[exp]
28.2 0.8446
AT1G12370 UVR2, PHR1 UV RESISTANCE 2, photolyase 1 ... Lus10024557
[exp]
28.9 0.7511
AT3G12110 ACT11 actin-11 (.1) Lus10005457
[exp]
31.4 0.8480
AT5G67360 ARA12 Subtilase family protein (.1) Lus10011089
[exp]
31.5 0.8247

Lus10002025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.