Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32400 501 / 2e-178 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G20240 204 / 2e-62 Mitochondrial substrate carrier family protein (.1) AT5G51050 160 / 1e-44 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G01100 157 / 2e-44 ADNT1 adenine nucleotide transporter 1 (.1.2) AT2G37890 153 / 4e-43 Mitochondrial substrate carrier family protein (.1) AT5G61810 152 / 1e-42 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT3G53940 148 / 4e-41 Mitochondrial substrate carrier family protein (.1) AT3G51870 147 / 1e-40 Mitochondrial substrate carrier family protein (.1) AT4G26180 146 / 1e-40 Mitochondrial substrate carrier family protein (.1) AT5G01500 148 / 2e-40 TAAC thylakoid ATP/ADP carrier (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002902 [exp] 680 / 0 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10030076 [exp] 413 / 5e-143 AT4G32400 424 / 3e-147 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10034806 [exp] 195 / 1e-58 AT3G20240 491 / 5e-175 Mitochondrial substrate carrier family protein (.1) Lus10033351 [exp] 194 / 3e-58 AT3G20240 496 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 170 / 3e-48 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 168 / 9e-48 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 168 / 3e-47 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 166 / 1e-46 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 159 / 7e-45 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252100 [exp] 555 / 0 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 545 / 0 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.008G004100 [exp] 208 / 7e-64 AT3G20240 494 / 1e-176 Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 170 / 4e-48 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 163 / 9e-47 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 162 / 2e-46 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.012G110700 [exp] 165 / 4e-46 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 159 / 4e-45 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.007G093300 [exp] 159 / 2e-44 AT5G64970 516 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.005G165200 [exp] 159 / 2e-44 AT5G64970 499 / 6e-176 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10002026 pacid=23166989 polypeptide=Lus10002026 locus=Lus10002026.g ID=Lus10002026.BGIv1.0 annot-version=v1.0 ATGGGCGGCAGGGGAAGAGGGATGCAGCTGTTCGACAATAAAGGCGACGGATTTCTATCAATCTCCGGATTGGGTTCACAAAACGACGCCGTCCAGTGTT TTCCCGGCGGCGGCCTTTTCGCCAGCGTCAATCAGAATGAGAACGGAGGTGTAAAGGTGAAAGCTTTCTACAGTGATTTGTACGACAAGTATCTATCATC CTTTGTTGGGTTCAAAGAGGATGAAGAAACGGAAACCACCTTAGAGAAGAAGGGGAGCAAAGGAAAAGGATGGCTGAAAGTGAAGATTAAGGTTAGGAAT CCTTCGTTGAGAAGGTTGCTAAGTGGGGGGATTGCAGGAGCTGTGTCTAGAACCGCTGTTGCGCCATTGGAGACTATAAGGACTCATTTGATGGTTGGGA GCAGTGGCTGCACATCCACTGAGGTTTTCAACAGTATAATGCAGCATGATGGCTGGACTGGTTTGTTTAGGGGGAATTTGGTCAATGTCATTCGTGTTGC TCCTAGCAAGGCTATTGAGTTATTTGCATATGATACAGTCAACAAGAAGTTGTCTCCTGCACCTGGAGAGCAAGCCAAGCTTCCTATTCCAGCCTCATTG ATTGCTGGTGCATGCGCCGGGGTGACCTCAACTCTGTGCACTTACCCCTTGGAGTTAGTCAAGACTCGCCTAACCATACAAAGAGGTGTCTACAAAGGTA TCGTAGACGCATTCATGAAGATCCTCCAACAAGAAGGCCCCGGAGAGCTCTACAGAGGGCTCGCCCCGAGCCTGATCGGAGTCGTGCCATACGCTGCAAC AAACTACTTCGCCTACGACACATTACGAAAGGCGTACCGGAAAGTATCTAAGCAAGAGAAGATAGGCAACATCGAGACATTGCTGATTGGTTCAGCAGCG GGCGCTATATCGAGCAGTGCGACTTTCCCGCTCGAGGTTGCGAGGAAGCAGATGCAGGTGGGCGCCTTGAGCGGGAGGCAAGTGTATAAGAACGTGGTTC ATGCGTTGGCGACCATACTTGAGGAGCAAGGCATCCAGGGTTTGTACAAAGGGCTAGGACCAAGCTGTATGAAATTGGTCCCTGCTGCTGGGATTTCGTT CATGTGCTATGAAGCTTGCAAGAGGATTCTTGTTGATGATGATCAGGAACAAGAAGAATCATAG
AA sequence Show only first row Show all	>Lus10002026 pacid=23166989 polypeptide=Lus10002026 locus=Lus10002026.g ID=Lus10002026.BGIv1.0 annot-version=v1.0 MGGRGRGMQLFDNKGDGFLSISGLGSQNDAVQCFPGGGLFASVNQNENGGVKVKAFYSDLYDKYLSSFVGFKEDEETETTLEKKGSKGKGWLKVKIKVRN PSLRRLLSGGIAGAVSRTAVAPLETIRTHLMVGSSGCTSTEVFNSIMQHDGWTGLFRGNLVNVIRVAPSKAIELFAYDTVNKKLSPAPGEQAKLPIPASL IAGACAGVTSTLCTYPLELVKTRLTIQRGVYKGIVDAFMKILQQEGPGELYRGLAPSLIGVVPYAATNYFAYDTLRKAYRKVSKQEKIGNIETLLIGSAA GAISSSATFPLEVARKQMQVGALSGRQVYKNVVHALATILEEQGIQGLYKGLGPSCMKLVPAAGISFMCYEACKRILVDDDQEQEES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10002026 [exp]	0	1
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	3.7	0.9488
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10013440 [exp]	7.5	0.9231
AT2G16250			Leucine-rich repeat protein ki...		Lus10023570 [exp]	9.4	0.9128
AT5G59790			Domain of unknown function (DU...		Lus10005887 [exp]	13.7	0.9125
AT5G06580			FAD-linked oxidases family pro...		Lus10015987 [exp]	14.4	0.9010
AT2G11890			adenylate cyclases (.1.2)		Lus10008820 [exp]	15.3	0.9162
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10012158 [exp]	15.5	0.9210
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10023248 [exp]	17.2	0.8868
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	18.2	0.9179
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10012361 [exp]	20.0	0.9124

Compare expression of checked genes

Lus10002026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.