Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11260 147 / 1e-45 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G17609 84 / 5e-21 bZIP HYH HY5-homolog (.1.2.3.4) AT3G56660 44 / 2e-05 bZIP BZIP49 basic region/leucine zipper motif protein 49 (.1) AT2G40950 42 / 9e-05 bZIP BZIP17 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002900 [exp] 218 / 2e-73 AT5G11260 197 / 3e-65 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10038995 [exp] 41 / 0.0003 AT2G40950 421 / 2e-137 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10027290 [exp] 41 / 0.0003 AT2G40950 429 / 2e-140 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10012104 [exp] 40 / 0.0008 AT2G40950 454 / 9e-150 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10010440 [exp] 40 / 0.0008 AT2G40950 466 / 5e-155 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G029500 [exp] 173 / 8e-56 AT5G11260 185 / 2e-60 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G251800 [exp] 166 / 5e-53 AT5G11260 143 / 6e-44 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G004200 [exp] 77 / 1e-17 AT3G17609 132 / 1e-39 HY5-homolog (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10002028 pacid=23166979 polypeptide=Lus10002028 locus=Lus10002028.g ID=Lus10002028.BGIv1.0 annot-version=v1.0 ATGCAAGAACAAGCCACCAGCTCAGCTGCAGCTAATTCGTTGCCGTCCAGTAGCGAGAGATCTTCCAGCTCCGCTCTACAGCTCGAAGTCAAAGAAGGAA TGGAGAGTGACGATGAGATCAGGAGAGTGCCGGAGATGGGAGGCGAGCCGGCGGGGACATCCGGGTCGGGTAGGAACGCGGCGGCGACGGTGGGGAAAGA CAGGGGTGGTCATCAGGGCTCCGGCGAAGGAACGAGGAAGCGAGGGAGAAGTCCGGCGGACAAAGAGAATAAGCGACTCAAACGGTTGCTGAGGAACAGA GTATCGGCGCAGCAAGCTCGGGAGAGGAAGAAAGCGTACCTGAGCGAGCTGGAGGTTAGAGTTAAGGATATGGAGAAGAAGAACTCTGAGCTTGAGGAGC GGCTCTCCACTCTGCAGAATGAGAACCAAATGCTCAGACAAGTTACTATGCAAGCCGTCGGAGTTGAAGGGCAGAACTGTGGCGGCGGTGGCTCCATGGC TGCAAATGAGAATGAGAGAGATGAAGCTGTTAGTTTCTAG
AA sequence Show only first row Show all	>Lus10002028 pacid=23166979 polypeptide=Lus10002028 locus=Lus10002028.g ID=Lus10002028.BGIv1.0 annot-version=v1.0 MQEQATSSAAANSLPSSSERSSSSALQLEVKEGMESDDEIRRVPEMGGEPAGTSGSGRNAAATVGKDRGGHQGSGEGTRKRGRSPADKENKRLKRLLRNR VSAQQARERKKAYLSELEVRVKDMEKKNSELEERLSTLQNENQMLRQVTMQAVGVEGQNCGGGGSMAANENERDEAVSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Lus10002028 [exp]	0	1
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Lus10010752 [exp]	3.0	0.8631
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	6.0	0.8582
AT5G13890			Family of unknown function (DU...		Lus10041505 [exp]	6.2	0.8538
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10009389 [exp]	6.9	0.8447
AT3G57990			unknown protein		Lus10012013 [exp]	7.2	0.8103
AT5G11810			unknown protein		Lus10022300 [exp]	10.5	0.8346
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	11.5	0.8494
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	13.6	0.8470
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10033445 [exp]	13.7	0.7670
					Lus10042010 [exp]	14.5	0.8252

Compare expression of checked genes

Lus10002028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.