Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11270 188 / 5e-57 OCP3 overexpressor of cationic peroxidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002899 [exp] 359 / 2e-124 AT5G11270 172 / 3e-51 overexpressor of cationic peroxidase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G251700 [exp] 221 / 8e-70 AT5G11270 208 / 1e-64 overexpressor of cationic peroxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10002029 pacid=23166977 polypeptide=Lus10002029 locus=Lus10002029.g ID=Lus10002029.BGIv1.0 annot-version=v1.0 ATGGCGATTGCTCTATATAGTTTCAATATCTCAGTAAATCTTCGGAGTTTTTCTTCTTCGGTTAAAGACCGAATTTTCACCGGCGGACAGTGTAAGCCGC CGCTGCATCTGCTTCTCCAGCGTTCGTTTACCGGTAGTAGTTCTTCTTCAGTCGCTTACTCTCGCCGTCAGAACCAAAATTCAGCTGTTAATTCCTCATC CAAGGGAAAGAGGAAAAGTTTACCTCCGGAAGATGATACAGGTGAAGATGCTTTCGATGCTCTCTTCGAGAACGATGAAGATTCTTCTGAACTTGATGAG GATGACTACGGTGAAATAGACGAAAAGGATCTTCAAAGGCTGCAGCTTGAGTTAGAGGAGGCATTCGGTGTTGATGGCGATGATGATGATGATGATGGAG ATTATGATGAGGACATGATCAGTTCATCTGGAGATTATATTGGGAAGGGCGCCAGTTCTGAGGATAGTCCTTTGAAGCTTAAGAATTGGCAATTTCGAAG ATTGGCCGTTGCCCTTAAGAAAGGCCGTCGTAAAATTAGCGTGAAAAATCTGGCGGGAGATCTCTGTCTTGAGAGGGGTGTTGTTCTTGAGTTGCTTCGG AATCCCCCTCCGAGTCTTGTGATGATGAGTGCTTCATTACCAGACGAACCTGAGCCAGTTCTTCTTCCTCCAGTGCAACGAACGATACCGATAGAGACTG AAATTGAGACGGCACCTAATGAGGAAGAAGAAGAAGAACGTGCTGTGAAAGCTGAGAAATTGCCGGTTCATGTTATGTTTCAGAAATGGAATGCTCAAAA GAGATTGAAGAAAGTCCATGCTCAAACCCTTGAGAGAGTTTACAGACGAACCAAGAGACCTACTAACACAATGGTTAGCAGCATTGTGCATGTGACAAAC TTGCCAAGGAAAAGAGTGGTGCAATGGTTCGAAGATAAACGCACAGAAGAAGGCGTCCCTGAACAACGTCTTCCTTATCGAAGGTCCATTCGTGAAACTG CCTCTTCTAGTTGA
AA sequence Show only first row Show all	>Lus10002029 pacid=23166977 polypeptide=Lus10002029 locus=Lus10002029.g ID=Lus10002029.BGIv1.0 annot-version=v1.0 MAIALYSFNISVNLRSFSSSVKDRIFTGGQCKPPLHLLLQRSFTGSSSSSVAYSRRQNQNSAVNSSSKGKRKSLPPEDDTGEDAFDALFENDEDSSELDE DDYGEIDEKDLQRLQLELEEAFGVDGDDDDDDGDYDEDMISSSGDYIGKGASSEDSPLKLKNWQFRRLAVALKKGRRKISVKNLAGDLCLERGVVLELLR NPPPSLVMMSASLPDEPEPVLLPPVQRTIPIETEIETAPNEEEEEERAVKAEKLPVHVMFQKWNAQKRLKKVHAQTLERVYRRTKRPTNTMVSSIVHVTN LPRKRVVQWFEDKRTEEGVPEQRLPYRRSIRETASSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11270		OCP3	overexpressor of cationic pero...		Lus10002029 [exp]	0	1
AT1G27510			Protein of unknown function (D...		Lus10039967 [exp]	2.2	0.9201
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10035045 [exp]	9.6	0.8952
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Lus10042931 [exp]	10.6	0.8779
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036570 [exp]	14.4	0.8780
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10030194 [exp]	15.2	0.8961
AT5G62960			unknown protein		Lus10039964 [exp]	16.0	0.8919
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Lus10005337 [exp]	23.3	0.8869
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10035818 [exp]	24.2	0.8571
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	24.5	0.8727
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Lus10001826 [exp]	25.5	0.8900

Compare expression of checked genes

Lus10002029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.