Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11280 306 / 2e-106 unknown protein AT1G80200 118 / 1e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002898 [exp] 336 / 9e-119 AT5G11280 281 / 1e-97 unknown protein Lus10036085 [exp] 170 / 4e-49 AT1G80190 253 / 1e-80 partner of SLD five 1 (.1) Lus10026797 [exp] 122 / 6e-34 AT5G11280 121 / 1e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G251600 [exp] 336 / 4e-118 AT5G11280 327 / 6e-115 unknown protein Potri.003G061800 [exp] 198 / 3e-60 AT1G15410 387 / 4e-132 aspartate-glutamate racemase family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002030 pacid=23166990 polypeptide=Lus10002030 locus=Lus10002030.g ID=Lus10002030.BGIv1.0 annot-version=v1.0 ATGGCGGTTCCGGCGGGTACTTCAAAGTCGAGAAGAGGAGCTGCCGCTGCGTCTTCATCGTCGTCGGCGTCCGCAGCAGTAGCGGCACCGGTACCGGTGG CTTCGAGAGGATGGGTGAAGAATCTTCCGTCCATAGCATCCCGCATCTATTTCTTCCTTATCATCCTTCAGGTCCCTCTCTTCAGGGTGCCATGCCGATC AGGAATGTGTACATCGCCGATTCACGTTACCTCTTCGCAACTGATTGCTAGTGATATCTTCCCTGTGCCAGTCGTGAAAGCCCTCCTCTATCCCGGTGCT GTAGTGAATGGCCTTGTAGTGAAAAGAACAGTTCCCAGTTGGGACAGCTTGCTTGATATCTATAACTTGACCACTATAAAGGATGCCTCTGCTGTAATGG ATCTCCAGCGCCTAGAGGTCCTTGCGGGAAGCTACTTCTCAGTAGCAGGAGCACTTGTAGGCATTCTGAAACCGGGGAGGATGAGCATGTTCGGAACGCT GCTGATACTCTGGGGGCTTATCAAGGAAGGGATCTTGGGGAAGCCGGTGAACACCGATCCTACTAAATCGATCTACGTGTACCCAACAATTGCGCTGGCC GTAGTTTGCGCATTCTCGTCGGTTAAGTATGACATGAAGAAGGTTGCTGCGAAGAAGAGCGCTCCTAGACCCATCGCAACGCCTTTACAGAGCTCTTCAA AATCGAAGCTGAGATGA
AA sequence Show only first row Show all	>Lus10002030 pacid=23166990 polypeptide=Lus10002030 locus=Lus10002030.g ID=Lus10002030.BGIv1.0 annot-version=v1.0 MAVPAGTSKSRRGAAAASSSSSASAAVAAPVPVASRGWVKNLPSIASRIYFFLIILQVPLFRVPCRSGMCTSPIHVTSSQLIASDIFPVPVVKALLYPGA VVNGLVVKRTVPSWDSLLDIYNLTTIKDASAVMDLQRLEVLAGSYFSVAGALVGILKPGRMSMFGTLLILWGLIKEGILGKPVNTDPTKSIYVYPTIALA VVCAFSSVKYDMKKVAAKKSAPRPIATPLQSSSKSKLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11280			unknown protein		Lus10002030 [exp]	0	1
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10012024 [exp]	1.4	0.9456
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021870 [exp]	1.7	0.9456
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10043059 [exp]	5.9	0.9293
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	6.0	0.9339
AT2G25430			epsin N-terminal homology (ENT...		Lus10001502 [exp]	6.0	0.9175
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10011262 [exp]	8.5	0.8860
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	9.2	0.9154
AT4G24330			Protein of unknown function (D...		Lus10015491 [exp]	9.2	0.9128
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	10.8	0.9366
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10031535 [exp]	11.4	0.9104

Compare expression of checked genes

Lus10002030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.