Plant FIBer expression Database

Lus10002031 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25500 365 / 1e-123 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002897
[exp]
806 / 0 AT5G25500 362 / 2e-122 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G251400
[exp]
412 / 7e-142 AT5G25500 394 / 4e-135 unknown protein
PFAM info
Representative CDS sequence
>Lus10002031 pacid=23166984 polypeptide=Lus10002031 locus=Lus10002031.g ID=Lus10002031.BGIv1.0 annot-version=v1.0
ATGATCGTCCGTCAGCCACTAACGTTCATTTCAAGAACGAAGGAAGTAGTTGCATCACCTCTGTTCTACACAACGACAGTTAAAGATGTTTCTTCGAAGC
TGGGACTGTATCATTCTTCTTCTTGTCCAGGAGGAGAAGAAATTCTCCCGCCTTTCGAATGGTACGAGAAGTCTTTCCCCAAGCTGAGGAAATTGACGCA
ACAGTTACGAAACGTGGACTTCGTCGACGGGACGGCTGTTTTTACGAACGAAGACGTTTCGTCGCCGTTGATTATGAACGCTAGAGTTGTGCAAAAGATC
ACTACTTTGAAGTCGCTTGTCAGGGTGTTCATTGGGTCGCCGTTAGTGCAGCAGAAGATTAAGGAGAACATGGCCGCATTGGGAGGTGAAGGAGGAGGAA
AACCAATTGGGTGTTTCAGAAAATCATTTGAAAGGGAAGCCATGGTTGTGGATTCACTGACCAAAGTTGGCAACTTTCTGAAGGTATCTGCTCAGCAGAG
GAAAGTTGTTCGACTCACGATTTGCCCACAGGTAACCCACCATCAAATATGGACCGGCTCCCTTAAGGAGGTACTGAACGAGTTGAAGTTGGAGATGGAT
CATGGCATTGGTACTAGCATGGCGCCTCAGATAGTCACTAGCTGTTTAAACTTCCTGGCCGATTCTGACGCTCGTTTCGAAGAAGACGACGATTCGTCGT
GTTCTTCATGGATGCGGCTCTCTCCTGCTCCGAAGAAGAAGCAAGCCACTGATTCAAGCAGGACTCGAACGTGGGAGGACATTCTCGAGATGTTCGATGA
TCTGATCAAGTGTCTACAATACGAGAAGGAGGAACCGCTCCAGCGCGTTTCAAAGAAGCTCGAGGTTATGAAGGAAGGGCTGGCCCAGATCAAGGATGTG
GTAATGGACCGAGGGATCGGATACAGAGAAGCTAAGCATCAGGAAAGCTTAGTGCAGAAGAAGCTATCGAGTACGTTGGGGCATTCTTCTCCTTGCTTGT
TCACACTTTTGCTTTATTACCTCTACGGACAGGTGAGGGACATTGAAGTTGATCTCAGTGGAGGTCTGTATCAGAGTGATGATAAGAAGAGTTACTGCCT
GCGAATGGGGCGGATTTTGAGCTCCAGCGAGGAGCAGATGGTTATGAGAGGTGTGAAGCATTTAGATAGAGTGCTTGGGCTGTTCAAGTTTGTCTGGGAA
ACTGCTGAGATGGATGGTGTTCTTGAGCTGCAAGGGCATCTGTTCTGTGTTGATGCCGAGGATCGAACAATCTCGTATAGAGGGAATTCGTTCTGGTTGC
ATGGAATCAGCTTTTGA
AA sequence
>Lus10002031 pacid=23166984 polypeptide=Lus10002031 locus=Lus10002031.g ID=Lus10002031.BGIv1.0 annot-version=v1.0
MIVRQPLTFISRTKEVVASPLFYTTTVKDVSSKLGLYHSSSCPGGEEILPPFEWYEKSFPKLRKLTQQLRNVDFVDGTAVFTNEDVSSPLIMNARVVQKI
TTLKSLVRVFIGSPLVQQKIKENMAALGGEGGGKPIGCFRKSFEREAMVVDSLTKVGNFLKVSAQQRKVVRLTICPQVTHHQIWTGSLKEVLNELKLEMD
HGIGTSMAPQIVTSCLNFLADSDARFEEDDDSSCSSWMRLSPAPKKKQATDSSRTRTWEDILEMFDDLIKCLQYEKEEPLQRVSKKLEVMKEGLAQIKDV
VMDRGIGYREAKHQESLVQKKLSSTLGHSSPCLFTLLLYYLYGQVRDIEVDLSGGLYQSDDKKSYCLRMGRILSSSEEQMVMRGVKHLDRVLGLFKFVWE
TAEMDGVLELQGHLFCVDAEDRTISYRGNSFWLHGISF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G25500 unknown protein Lus10002031
[exp]
0 1
AT1G55890 Tetratricopeptide repeat (TPR)... Lus10020073
[exp]
1.4 0.9226
AT2G40940 ERS1 ethylene response sensor 1 (.1... Lus10010310
[exp]
1.7 0.9162
AT2G33410 RNA-binding (RRM/RBD/RNP motif... Lus10043124
[exp]
2.0 0.9215
AT3G51790 ATG1 transmembrane protein G1P-rela... Lus10031266
[exp]
2.4 0.9022
AT2G40330 RCAR9, PYL6 regulatory components of ABA r... Lus10029222
[exp]
2.8 0.9102
AT1G58330 ZW2 transcription factor-related (... Lus10005041
[exp]
3.9 0.9044
AT2G41080 Tetratricopeptide repeat (TPR)... Lus10003325
[exp]
4.6 0.8890
AT1G13410 Tetratricopeptide repeat (TPR)... Lus10021068
[exp]
6.9 0.8543
AT2G40330 RCAR9, PYL6 regulatory components of ABA r... Lus10007275
[exp]
7.5 0.8764
AT2G30130 AS2 PCK1, LBD12, AS... PEACOCK 1, Lateral organ bound... Lus10017431
[exp]
8.4 0.8686

Lus10002031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.