Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22780 248 / 5e-71 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G14770 231 / 3e-65 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22760 216 / 3e-60 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 201 / 9e-55 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 130 / 2e-31 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT4G29000 129 / 6e-31 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT5G25790 126 / 1e-30 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G16160 108 / 4e-25 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002895 [exp] 1313 / 0 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10006604 [exp] 188 / 8e-50 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 186 / 2e-48 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 137 / 2e-33 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10009494 [exp] 137 / 3e-33 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10043225 [exp] 132 / 7e-32 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10023656 [exp] 129 / 5e-31 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 110 / 1e-24 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10020590 [exp] 70 / 3e-13 AT4G14770 102 / 3e-25 TESMIN/TSO1-like CXC 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G251200 [exp] 586 / 0 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G030000 [exp] 541 / 3e-180 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.010G083400 [exp] 250 / 3e-71 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.008G156100 [exp] 244 / 2e-69 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.005G051100 [exp] 227 / 1e-62 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.001G173600 [exp] 223 / 1e-61 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.013G038301 [exp] 151 / 7e-39 AT3G22780 196 / 1e-55 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.001G184800 [exp] 124 / 7e-30 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.006G160400 [exp] 125 / 9e-30 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G083000 [exp] 122 / 3e-29 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [flax] [poplar] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Lus10002033 pacid=23166976 polypeptide=Lus10002033 locus=Lus10002033.g ID=Lus10002033.BGIv1.0 annot-version=v1.0 ATGGATTCTCCTGAAGTAACCAAAACTACCCCCGCCGCTGCTTCTTCTGCCACCCTCACTTCCCCCATCGTCGTTCAAGAGTCTCCGTTTTCGAACTTTG TGAGCAATCTATCTCCTATAGGGCCTGTTAAGAGTTCTCGAATATCACACGGATATGCAGACCTCAGTTCTCCTCCCCTCGTCTTCACTTCGCCACATGT GGTACCGCAACGTGAAGCAAGTTTGTTGCGAAGGGTTCAGTGTCCTCAGACGTCTAGTTCACAAACAGTGAAAGTTGGTGGGAAAGCCTTTGCTGATATT CCACCTGAGTTAGAGAAATGTGATCCCTATTTTGGTAGGAGGTTTATTATTGGCAGTCAGAAAGATAGTGATCATATTAGCTGCACAAAGGAGCTCAGCG ACAGTCCTTCAGGGTGTGTTGACGAGTACTTATCAGAAGCAGTGGATGCAGACTGCACTGATTCAACCAGCCTGATCAGGGAGACATCTGCTGATCCTGT TGAATCATCAGCATGTGGTTTAGTAAACTTACAGGAAAAGAAGTTGCAGTCCGGAACTGATAAGGAGGTGATAAATTTCGAGACTAGGCCTACTGACAGT GGACACGACAGAAGTACCTGTGTACCACCATCCGATGACTGCAATAATAGCACGTCACAAATGCAATTGGACCTTGTTTCTAATGAAGTGCAATCAGAAA ATTGCTTCGTTAAGGATGCAGGACTTGAATGTAACCGCTCTCTACCTGAATTGTCACAGGATTTGCAGGAAAATGAAGTATATCTCGAGCAGGTGGGAGG AGGCTTTGACAATCCTGAATGTGATGTAATCCAGATTAATCCTGAGGCAAGTCAATTGCATCGTGGCGTGAGTAGACGCTGCCTTCAATTCGGAGAAGGC CAAGGGGTTGGAAAAGGTAGTGCGAATGTGATGGGCTCGGGATTACCCTTCTCTGCGGGGATGGAAAGTTCAGAACTGTCTGATTCAGGCATTGCTGCCC GTACCAAGAAATCTCAAATGATCAACTTGTCCCGGGTGTTAGCATCCAAACGTCCTCCTAACCACAATGCAAATACCGTTTTGTCTATTTCCAAACCGTC TGGTATCGGATTGCATCTAAATAGCATTCTTAACGCCTCAGCAATGGGTTGTATTGGCAGTGAAAGCATCAACAGTCAGTCAGTGGATGTTGGAGACAGA ATACTTGAAAACCAGGCTGCACCTGTTTCTGTGTCTTCCACCACAGATTCTTTCCACACTACGAAATCATTGACTATAATTCAGTCATTTGAGCCAAACA CAACCCCACAGGAGAAGAGGCCACTAGATTCAGAGCAAAATGAATCAAGTCCTAAAAGGAAAAGGAAGAAACTTACCCCTGATGGTGGTGATGGTTGCAA ACGTTGCAATTGTAAGAAGACTAAATGCTTGAAACTATACTGTGATTGTTTCGCTGCTGGGATTTATTGTTCAGAAGCTTGTAGTTGCCAAGGTTGCTTT AACAAGCCCGAGTATGAAGATACTGTTCTACAGACACGCCAACTAATCGAATCACGTAACCCACTCGCTTTTGCTCCGAAGGTTGTACATCATGCATCCA GAGTTCCCGCCGCTATTGTGGCAGATGTGAACGGGACTACTCCATCATCTGCAAGGCACAAGAGAGGATGCAACTGCAAGAAGTCAATGTGTCTTAAAAA ATATTGTGAATGCTATCAGGCGAATGTAGGATGCTCGAGTGGTTGCCGATGTGAAGGGTGCAAGAATGTCTTTGGTATGAAAGACGATTTTGCTATTGCT GAAGAAATTACGAGCAGCACAACCAGCAAGGATCTAATAGAGAATACAGCTGATGACAAATTACAAATGGTGGTTTACAGCGATGATCGTGTGCATACAG AGATGTATAATGCACAAAGCCCGGCACCATTTACACCCCAGCTCCAGTTCTCCGAGCATAATAGAGAAGGCGCACCAAAGTTCCGACCTTTTTCCACAAA ATATCTACCATCGCCACTGTCAGATATCCCCACGTTTCAATCTGTAGAGAAAAGTGGAGATGGACCCTCTGTAGGCTCCTCCGGCCAGGAGATGGAGTGC AGCATTTCCGAAATGATCGAGCAGTTTTCGCCAAGGTTCGATCCAATCGGTGATAATGTATGTGATCGAAATGCTTCCTCCTCGTCTGCATCTACAACTA AGGAGTTGGCTAATGTTTCTTCACGTCCACTGCAACTTCTCCGATGGCGTGGCTCCCCAATAACTCCAATGCCGAACTTGGGGGAGATCGGTAAGAGTAT AAAAGGGCCGGATTCCGGCAAGAAGATGAGTGAAGTGTTAATGGCAGATGACACCCCTGAGATATTGAAGGAAACTTGTAGCCCAATTCAATCTGTGAAA GCAACCTCTCCGAATAAAAAACGGGTTTCTCCTCCTCATGCACATCCCAAAAGTATCCATGGCTTCGGATCATCATCTTCAGGAAGCTTCAAAACAAGGA AGTTCGTACTGAAGTCTGTCCCTTCTTTTCCCCCTCTCACTCCTTGCTTGGGTTCCAAGACTAAAACCAACGAGGAGCAAGAGAAATAG
AA sequence Show only first row Show all	>Lus10002033 pacid=23166976 polypeptide=Lus10002033 locus=Lus10002033.g ID=Lus10002033.BGIv1.0 annot-version=v1.0 MDSPEVTKTTPAAASSATLTSPIVVQESPFSNFVSNLSPIGPVKSSRISHGYADLSSPPLVFTSPHVVPQREASLLRRVQCPQTSSSQTVKVGGKAFADI PPELEKCDPYFGRRFIIGSQKDSDHISCTKELSDSPSGCVDEYLSEAVDADCTDSTSLIRETSADPVESSACGLVNLQEKKLQSGTDKEVINFETRPTDS GHDRSTCVPPSDDCNNSTSQMQLDLVSNEVQSENCFVKDAGLECNRSLPELSQDLQENEVYLEQVGGGFDNPECDVIQINPEASQLHRGVSRRCLQFGEG QGVGKGSANVMGSGLPFSAGMESSELSDSGIAARTKKSQMINLSRVLASKRPPNHNANTVLSISKPSGIGLHLNSILNASAMGCIGSESINSQSVDVGDR ILENQAAPVSVSSTTDSFHTTKSLTIIQSFEPNTTPQEKRPLDSEQNESSPKRKRKKLTPDGGDGCKRCNCKKTKCLKLYCDCFAAGIYCSEACSCQGCF NKPEYEDTVLQTRQLIESRNPLAFAPKVVHHASRVPAAIVADVNGTTPSSARHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCEGCKNVFGMKDDFAIA EEITSSTTSKDLIENTADDKLQMVVYSDDRVHTEMYNAQSPAPFTPQLQFSEHNREGAPKFRPFSTKYLPSPLSDIPTFQSVEKSGDGPSVGSSGQEMEC SISEMIEQFSPRFDPIGDNVCDRNASSSSASTTKELANVSSRPLQLLRWRGSPITPMPNLGEIGKSIKGPDSGKKMSEVLMADDTPEILKETCSPIQSVK ATSPNKKRVSPPHAHPKSIHGFGSSSSGSFKTRKFVLKSVPSFPPLTPCLGSKTKTNEEQEK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002033 [exp]	0	1
AT5G55830			Concanavalin A-like lectin pro...		Lus10016620 [exp]	1.4	0.9661
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10011687 [exp]	2.4	0.9572
AT5G55820		WYR	WYRD, unknown protein		Lus10022519 [exp]	2.4	0.9635
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	4.9	0.9614
AT4G10710		SPT16	global transcription factor C ...		Lus10039410 [exp]	5.0	0.9361
AT3G47460		ATSMC2	Structural maintenance of chro...		Lus10027215 [exp]	5.7	0.9610
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10022136 [exp]	7.3	0.9413
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	9.2	0.9464
AT1G21730			P-loop containing nucleoside t...		Lus10018145 [exp]	9.7	0.9411
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	11.0	0.9497

Compare expression of checked genes

Lus10002033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.