Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15650 230 / 6e-74 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G20060 190 / 2e-58 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52700 183 / 6e-56 alpha/beta-Hydrolases superfamily protein (.1) AT1G51300 92 / 1e-21 alpha/beta-Hydrolases superfamily protein (.1) AT1G52695 79 / 1e-16 alpha/beta-Hydrolases superfamily protein (.1) AT1G47786 69 / 2e-13 alpha/beta-Hydrolases superfamily protein (.1) AT1G52470 68 / 3e-13 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52460 68 / 6e-13 alpha/beta-Hydrolases superfamily protein (.1) AT1G47780 54 / 6e-09 alpha/beta-Hydrolases superfamily protein (.1) AT1G52440 41 / 0.0005 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008078 [exp] 335 / 3e-115 AT5G20060 362 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10026054 [exp] 197 / 4e-61 AT1G52700 337 / 2e-117 alpha/beta-Hydrolases superfamily protein (.1) Lus10014347 [exp] 191 / 5e-59 AT1G52700 328 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1) Lus10019438 [exp] 181 / 3e-55 AT5G20060 387 / 1e-137 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10043294 [exp] 181 / 2e-54 AT5G20060 385 / 3e-136 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G030200 [exp] 293 / 9e-99 AT5G20060 373 / 4e-132 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G251100 [exp] 293 / 9e-99 AT5G20060 370 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.001G173700 [exp] 248 / 3e-81 AT3G15650 389 / 7e-138 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G060300 [exp] 240 / 4e-78 AT1G52700 382 / 1e-135 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G070700 [exp] 183 / 6e-56 AT5G20060 398 / 8e-142 alpha/beta-Hydrolases superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002034 pacid=23166972 polypeptide=Lus10002034 locus=Lus10002034.g ID=Lus10002034.BGIv1.0 annot-version=v1.0 ATGAACTACAATACCTCTGGCATGGGTTCTGATAACAGAACTTCATCAAGATCACTCGAGTTTGGAAGGACCTACGTCGTTAGGCCGAAAGGGAAGCACC AGGCCACATTGGTTTGGCTTCATGGCTTAGGTGACAAGGGATCAAGATTAAATGGATTTGCCCCACTGCTCCGACCAGGCCAGTCGCTATATTCGGTGGA TTTCCGTGCACTGCGTGTAAGAAACCAAAGAAAAGAACTGTGCTTTTTCGTTGTGGAGCTAGAACCTTACCCTATTAAGCTTATGCTCGAGGATGATAAC TTGCATAACAATATTGTAGGGTTTGATGTTGGAGAAATTTCGGAAGACAGTCCTGATGACGTAGAGGGACTAGATGCTTCAGCTGCACATGTCGCCAACT TGTTGTCCACGGAGCCTGCTGATATCAAAGTTGGTGTTGGTGGCTTCAGCATGGGTGCTGCAACTGCCCTTTACTCTGCTACTTGCCAGATATTAGGGCA GTATGGGAATGGGAATCCATACCAAGTGAACCTAAGTGCTGTAGTTGGTCTTAGCGGCTGGCTTCCTTGTTCAAGGTTTGGCTTCTGGAATTCTCAATTC CAAACAACCTTTCAAATATTGCCTACTTGTTTCTTCCGGGTTCGAGAATTTTGCTCAGCCAGTGATTTCTCTTGCAGGACTCTGAGAACTCGGATGGAAA GATCGTACGATGCTGCAAGGCTTGCAGCTGCAGCGTCTCTGCCCATTTTCTCTGCCCATTTTGCTCTGTCATGGATCAGGGTGTACTTGTCATGCAACTG TTTCATCCCAATAGTTCGAGTTGTTGGGAGAGAGTTCATATTGGTTCTTGAGGGTAACGGTTCATCCCAAATACTGATCAGTTTACTTCTTTCAGGCGAC GACGTGGTGGCTCACAAGCACGGAGAGAAATCAGCACGGACATTGAGCTCAGTCGGGTTCCAAAATCTCGGGTTCAGAACCTACAATGGAATGGGTCACT ACACCATCCCAGAAGAGACCAGTGAAGTCTGCACTTGGCTTACCACAAAACTGGGACTGGAGGGATCTTGA
AA sequence Show only first row Show all	>Lus10002034 pacid=23166972 polypeptide=Lus10002034 locus=Lus10002034.g ID=Lus10002034.BGIv1.0 annot-version=v1.0 MNYNTSGMGSDNRTSSRSLEFGRTYVVRPKGKHQATLVWLHGLGDKGSRLNGFAPLLRPGQSLYSVDFRALRVRNQRKELCFFVVELEPYPIKLMLEDDN LHNNIVGFDVGEISEDSPDDVEGLDASAAHVANLLSTEPADIKVGVGGFSMGAATALYSATCQILGQYGNGNPYQVNLSAVVGLSGWLPCSRFGFWNSQF QTTFQILPTCFFRVREFCSASDFSCRTLRTRMERSYDAARLAAAASLPIFSAHFALSWIRVYLSCNCFIPIVRVVGREFILVLEGNGSSQILISLLLSGD DVVAHKHGEKSARTLSSVGFQNLGFRTYNGMGHYTIPEETSEVCTWLTTKLGLEGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15650			alpha/beta-Hydrolases superfam...		Lus10002034 [exp]	0	1
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Lus10003122 [exp]	2.4	0.8461
					Lus10014474 [exp]	3.9	0.8607
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Lus10034387 [exp]	12.4	0.7996
AT1G06980			unknown protein		Lus10020386 [exp]	16.6	0.7797
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10011363 [exp]	16.9	0.7220
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10039010 [exp]	17.4	0.7917
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031726 [exp]	18.3	0.8046
AT3G59250			F-box/RNI-like superfamily pro...		Lus10031018 [exp]	19.4	0.7574
AT1G16290			unknown protein		Lus10036958 [exp]	20.0	0.8479
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10021709 [exp]	20.5	0.8016

Compare expression of checked genes

Lus10002034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.