Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25830 95 / 3e-22 GATA GATA12 GATA transcription factor 12 (.1) AT4G32890 64 / 1e-11 GATA GATA9 GATA transcription factor 9 (.1) AT3G60530 42 / 0.0002 GATA GATA4 GATA transcription factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011622 [exp] 88 / 7e-21 ND / Lus10011430 [exp] 69 / 2e-13 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10037572 [exp] 66 / 3e-12 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10038273 [exp] 62 / 1e-10 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10025829 [exp] 62 / 1e-10 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G237700 [exp] 115 / 1e-29 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.018G044900 [exp] 111 / 4e-28 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1) Potri.001G188500 [exp] 73 / 1e-14 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.002G142800 [exp] 42 / 0.0003 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.008G038900 [exp] 42 / 0.0004 AT3G54810 150 / 1e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.010G223300 [exp] 42 / 0.0004 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.014G058600 [exp] 40 / 0.0008 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002036 pacid=23142502 polypeptide=Lus10002036 locus=Lus10002036.g ID=Lus10002036.BGIv1.0 annot-version=v1.0 ATGGATGATGTCCACGAATTGTACCATGATTCTTCTGTTGCTGCTGCTGATGCTAATTGTGCCACTGACCATTTCATCGTCGAGGACCTCTTGGACTTCT CCAACGAAGACGACTCCTCCCCCGTCCTCACGGTCGACGCTCCTACTGCCGCTGCTTGCTCTGCCGCTTTCGATACCACCGACTCCTCCACCCTCACTGT CGTTGATAGCTGCAATTCCTCCTCCTTCTCCGCCTCCGCCCCTCCTCATTTCTCCGACGTCCACTTCTCCAACGACCTTTGTGTTCCGTACGATGATTTG GCGGAGCTAGAATGGTTGTCGAATATAGTGGAGGAATCGTTCTCCACCGAGGACTTGCAAAAGCTGCATATCATCTCCGGGATTAAAGCCCGCCCCCAAG ATTCCTCCGACACCCCTGATTTCACCGCCGGCAACAACAACAACCCAATCTTCAACTCCGACGTCTCCGTTCCTGCCAAAGCACGTAGCAAGCGTTCCCG GGCAGCGGGCTGCAACTGGGCCTCTCGCCTTCTGGTTCTCTCCCCGTCTTCTTCCTCCTCCTCCTCCGTTGACCCGCCTGAAATTGCGGTTGCTCCGCCT ACTCCTCCCCCACCGCACCATAATCCGTCGCTGGCCGGCGGCGAGCCCCACATTTGTGCTGACGAAGCATTCCAATTCTCACCGGAAGGTGATGGAGTTG CGGAAGCAGAAAGAGATGTTGAGAGGTGGCCATCCGCATACGGTGATCCACCAGCAGCAGCAGCAGCCGCCGCAGTTTTTGAACGGTCATGGTCATCCAC ATCATCACCATCATCATCAACACCAACACCACCATCACCATCCGAGCATGGTGTTTGA
AA sequence Show only first row Show all	>Lus10002036 pacid=23142502 polypeptide=Lus10002036 locus=Lus10002036.g ID=Lus10002036.BGIv1.0 annot-version=v1.0 MDDVHELYHDSSVAAADANCATDHFIVEDLLDFSNEDDSSPVLTVDAPTAAACSAAFDTTDSSTLTVVDSCNSSSFSASAPPHFSDVHFSNDLCVPYDDL AELEWLSNIVEESFSTEDLQKLHIISGIKARPQDSSDTPDFTAGNNNNPIFNSDVSVPAKARSKRSRAAGCNWASRLLVLSPSSSSSSSVDPPEIAVAPP TPPPPHHNPSLAGGEPHICADEAFQFSPEGDGVAEAERDVERWPSAYGDPPAAAAAAAVFERSWSSTSSPSSSTPTPPSPSEHGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Lus10002036 [exp]	0	1
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10027386 [exp]	6.0	0.8533
AT5G40150			Peroxidase superfamily protein...		Lus10039445 [exp]	8.0	0.8605
AT5G62580			ARM repeat superfamily protein...		Lus10036647 [exp]	8.0	0.8733
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10000536 [exp]	8.9	0.8381
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	13.2	0.8421
AT4G39840			unknown protein		Lus10041688 [exp]	14.0	0.8497
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10005231 [exp]	16.6	0.7867
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10042528 [exp]	17.1	0.8475
AT3G11320			Nucleotide-sugar transporter f...		Lus10014832 [exp]	17.7	0.8328
AT3G11320			Nucleotide-sugar transporter f...		Lus10009878 [exp]	20.5	0.7996

Compare expression of checked genes

Lus10002036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.