Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52150 1017 / 0 HD ATHB15, ICU4, CNA, ATHB-15 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) AT4G32880 1013 / 0 HD ATHB8, ATHB-8 homeobox gene 8 (.1) AT2G34710 807 / 0 HD ATHB14, PHB-1D, ATHB-14, PHB PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT5G60690 806 / 0 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G30490 793 / 0 HD ATHB9, PHV PHAVOLUTA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT4G04890 75 / 1e-13 HD PDF2 protodermal factor 2 (.1) AT4G21750 69 / 1e-11 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G79840 58 / 2e-08 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT3G61150 53 / 9e-07 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT1G73360 52 / 2e-06 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011616 [exp] 1290 / 0 AT4G32880 1293 / 0.0 homeobox gene 8 (.1) Lus10037568 [exp] 1018 / 0 AT1G52150 1441 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10011426 [exp] 927 / 0 AT4G32880 1338 / 0.0 homeobox gene 8 (.1) Lus10000719 [exp] 813 / 0 AT5G60690 1409 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10021470 [exp] 810 / 0 AT5G60690 1419 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10023357 [exp] 803 / 0 AT2G34710 1316 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10038449 [exp] 801 / 0 AT2G34710 1336 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10018359 [exp] 77 / 2e-14 AT4G04890 805 / 0.0 protodermal factor 2 (.1) Lus10006765 [exp] 75 / 2e-13 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G237500 [exp] 1148 / 0 AT4G32880 1412 / 0.0 homeobox gene 8 (.1) Potri.018G045100 [exp] 1133 / 0 AT4G32880 1400 / 0.0 homeobox gene 8 (.1) Potri.001G188800 [exp] 1048 / 0 AT1G52150 1476 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.003G050100 [exp] 1034 / 0 AT1G52150 1488 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.001G372300 [exp] 865 / 0 AT2G34710 1358 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.011G098300 [exp] 855 / 0 AT2G34710 1350 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.009G014500 [exp] 814 / 0 AT5G60690 1382 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.004G211300 [exp] 787 / 0 AT5G60690 1375 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.004G020400 [exp] 71 / 2e-12 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.002G154700 [exp] 70 / 4e-12 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0183 [flax] [poplar] PAS_Fold PF08670 [flax] [poplar] MEKHLA MEKHLA domain CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain
Representative CDS sequence Show only first row Show all	>Lus10002037 pacid=23142505 polypeptide=Lus10002037 locus=Lus10002037.g ID=Lus10002037.BGIv1.0 annot-version=v1.0 ATGCCCAAAACCAAGCTCCCTACGCCGCCAGCAGCTAATCCGAGACTGCCCAATCCTGTCCCACATAGAGCCCAGCCACCCCCCACGCCTCCTCCTCCCC TGACGACGACTGATACAAGTTGTGAATCGGTGGTGACGACGAGCGGGCATCAGCGTGATGCGGCCACCCCTGCTGGACTTTTGTCGATTGCAGAGGAGAC TTTAGCAGAGTTTTTATCAAAGGCGACTGGGACTGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGGTCCAATGCTACGCTCATGGTGGCAATGGCATT GCTGCTCGTGCTTGCGGCCTTGTCGGTCTAGAACCCACAAGAGTGGCTGAAATCCTTAAAGATCGGCCATCATGGTATCGTGATTGCCGCGCAGTTGAGG TTCTAAATGCAATGTCCACTGGGAATGGTGCAACTATTGAGCTCCTTTACATGCAGCTCTATGCACCTACCACGTTAGCACCCGCTCGCGACTTCTGGTT ACTGCGTTACACATCTGCTCTAGAGGATGGCAGCCTTGTGGTATGCGAGAGATCGCTTAACAATACTCAGAATGGTCCTAGCATGCCACCTACTCAGCAT TTTGTTAGAGCACAGATGCTGCCTAGTGGATATTTGATTAGGCCTTGTGACGGTGGTGGATCAATTATCCATGTAGTCGATCATTTGGATCTAGAGCCTT GGAGCGTACCTGAAGTCCTCCGGCCACTGTATGAGTCGCCAACTCTGCTAGCTCAGAAGACAACTATGGCGGCATTACGACATTTGAGACAGATATCTCA AGAAGTTTCTCAGCCAAATGTGCATGGTTGGGGAAGAAGGCCTGCAGCTCTACGTGCTCTTGGTCAGAAACTAAGCAAGGGATTCAACGAAGCAGTGAAC GGTTTTAGTGATGAAGGGTGGTCTGTATTGGAAAGTGATGGAATTGATGATGTAACTCTTCTTGTGAACTCATCTCCTAGCAAAATGATGGGTTTGAATT TTGCATATGCTAACGGATTTCCAGCTATGAACAACGCGGTGCTCTGTGCCAAAGCTTCTATGCTACTTCAGAATGTGCCACCAGCTGTATTGTTGAGGTT CCTGCGTGAGCATCGATCCGAATGGGCAGACAGTGGTATTGATGCATATGCAGCAGCTGCTGTTAGAGCTGGACCATGTGGTGGTTTGCCAGTAGTCTCT GGAGCTGGGAATTTCGGGGGACAGTTCATGGAGGTGATTAAGCTTGAGAATATGGGGTATCGTGAAGACATGATGATGCCTGGTGACATTTTTCTCTTGC AACTTTGCAATGGAGTGGATGAGAATGCTGTTGGCAACTGTGCTGAACTCATGTTTGCTCCAATTGATGCTTCATTCTCTGATGATGCTCCTATTATCCC CTCGGGTTTTCGAATCATTCCCCTGGATCCAGGAATGGATGCTTCTAGTCCAAACCGGACGCTGGATCTGGCATCTGCTCTAGAAGTTGGAAGACCGTCT GGAAACAAAGCATCTGGGAGTGTTGCAGGACAAAGTGGAAGTAGTAATAGTACAAAGTCAGTGATGACAATAGCATTCCAGTTTGGGTTCGAGATGCATC TCCAAGAGAATGTAGCATCCATGGCAAGGCAGTATGTCAGAAGTATTATAGCTTCGGTTCAGAGGGTGGCAATGGCTCTCTCCCCTTCTGGTTTCGGTTC GCAGCCCGGTTTACGCACCCTACCTGGAAGCCCTGAGGCACTCACACTCGCTCGCTGGATATCCCAAAGCTATAGCTGCTATCTAGGTGCTGAACTGCTC AAGTGCGAAGCAAATGAATCGGTTCTGAAAGCTCTCTGGCATCACTCGGACGCGATTTTGTGCTGCTCTTTGAAGGCTCTGCCAGTATTTACATTTGGAA ATCAGGCAGGGTTAGACATGCTTGAGACAACTATGGTGGCACTTCAAGACATTACACTGGAGAAGATATTTGATGAGAATGGGAGGAAGCATTTGTGTTC TGAGTTCCCACAAATAATGCAGCAGGGATTCATGTGCCTTCAAGGAGGGGTTTGCATGTCAAGCATGGGGAGGCCAGTGTCATATGAAAGAGCAGTTGCA TGGAAAGTGTTGAACGACGACGAAGCTGCTCATTGCATTTTTCTTCCGCCTGCCATCGTCAAGCAGCAGCTCGACTCCACATTCACAATTCCTCGTTTCG TTTCGCTGGACAAGTTACGTAAAGCATCAAGCTTGGAGGGTTCTTCAACCGACGAATCTCTCGAAACTCCTTGGGGACGTTGTTTGTGGAAAGATCGAAG CCCCATTGTTATGCGCTCGGTGGCGGTACGTAACAACTTGGTATCATAG
AA sequence Show only first row Show all	>Lus10002037 pacid=23142505 polypeptide=Lus10002037 locus=Lus10002037.g ID=Lus10002037.BGIv1.0 annot-version=v1.0 MPKTKLPTPPAANPRLPNPVPHRAQPPPTPPPPLTTTDTSCESVVTTSGHQRDAATPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKVQCYAHGGNGI AARACGLVGLEPTRVAEILKDRPSWYRDCRAVEVLNAMSTGNGATIELLYMQLYAPTTLAPARDFWLLRYTSALEDGSLVVCERSLNNTQNGPSMPPTQH FVRAQMLPSGYLIRPCDGGGSIIHVVDHLDLEPWSVPEVLRPLYESPTLLAQKTTMAALRHLRQISQEVSQPNVHGWGRRPAALRALGQKLSKGFNEAVN GFSDEGWSVLESDGIDDVTLLVNSSPSKMMGLNFAYANGFPAMNNAVLCAKASMLLQNVPPAVLLRFLREHRSEWADSGIDAYAAAAVRAGPCGGLPVVS GAGNFGGQFMEVIKLENMGYREDMMMPGDIFLLQLCNGVDENAVGNCAELMFAPIDASFSDDAPIIPSGFRIIPLDPGMDASSPNRTLDLASALEVGRPS GNKASGSVAGQSGSSNSTKSVMTIAFQFGFEMHLQENVASMARQYVRSIIASVQRVAMALSPSGFGSQPGLRTLPGSPEALTLARWISQSYSCYLGAELL KCEANESVLKALWHHSDAILCCSLKALPVFTFGNQAGLDMLETTMVALQDITLEKIFDENGRKHLCSEFPQIMQQGFMCLQGGVCMSSMGRPVSYERAVA WKVLNDDEAAHCIFLPPAIVKQQLDSTFTIPRFVSLDKLRKASSLEGSSTDESLETPWGRCLWKDRSPIVMRSVAVRNNLVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10002037 [exp]	0	1
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011616 [exp]	2.2	0.9667
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10037568 [exp]	3.0	0.9614
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10025928 [exp]	3.0	0.9350
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011426 [exp]	3.2	0.9478
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10027221 [exp]	5.5	0.9642
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Lus10010015 [exp]	7.2	0.9507
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036586 [exp]	10.2	0.9157
AT3G14470			NB-ARC domain-containing disea...		Lus10003571 [exp]	11.5	0.9098
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10025678 [exp]	12.7	0.9223
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10013968 [exp]	15.1	0.8979

Compare expression of checked genes

Lus10002037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.