Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05800 91 / 2e-20 unknown protein AT2G24960 83 / 2e-17 unknown protein AT3G11290 77 / 1e-15 unknown protein AT4G02210 71 / 1e-13 unknown protein AT2G19220 71 / 1e-13 unknown protein AT3G11310 57 / 8e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024329 [exp] 580 / 0 AT5G05800 81 / 7e-17 unknown protein Lus10025958 [exp] 126 / 6e-34 AT2G24960 102 / 4e-24 unknown protein Lus10014257 [exp] 122 / 6e-31 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10007443 [exp] 72 / 2e-15 AT5G05800 50 / 4e-08 unknown protein Lus10024453 [exp] 70 / 1e-14 AT5G05800 50 / 7e-08 unknown protein Lus10010304 [exp] 67 / 2e-12 AT4G02210 395 / 1e-135 unknown protein Lus10013421 [exp] 66 / 9e-12 AT4G02210 418 / 1e-144 unknown protein Lus10026250 [exp] 62 / 1e-10 AT2G24960 750 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023800 [exp] 318 / 7e-109 AT2G24960 89 / 2e-19 unknown protein Potri.002G200600 [exp] 90 / 6e-20 AT4G02210 471 / 1e-163 unknown protein Potri.004G135901 [exp] 81 / 9e-19 AT5G05800 44 / 1e-05 unknown protein Potri.006G265900 [exp] 78 / 9e-16 AT2G24960 761 / 0.0 unknown protein Potri.004G172900 [exp] 69 / 4e-13 AT2G24960 96 / 1e-21 unknown protein Potri.013G025200 [exp] 70 / 5e-13 AT2G24960 514 / 2e-168 unknown protein Potri.008G209401 [exp] 57 / 3e-09 AT5G05800 99 / 3e-23 unknown protein Potri.007G118701 [exp] 56 / 7e-09 AT5G05800 109 / 6e-27 unknown protein Potri.006G116400 [exp] 54 / 4e-08 AT5G05800 97 / 3e-22 unknown protein Potri.014G061450 [exp] 54 / 5e-08 AT5G05800 111 / 2e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002039 pacid=23145670 polypeptide=Lus10002039 locus=Lus10002039.g ID=Lus10002039.BGIv1.0 annot-version=v1.0 ATGGACGCTGAACCACTTAATCAGCTGAAACCAGAAAGAACAAGAACAAGGTGGTCACCAGCATTGGACAAGGTGTTTGCTGACCTGATGGTGAAGCAGA TCCAACTGGGAAACAGACCAAATAGTTTCTTCGACAAGAAAACTTGGAACACCATTCGTGACGAATTCAATAGTCAGACGGATCTCAACTTCAACAACAA TCAGTTGCGAAAGCACTTTGATGTTCTACGAACACGCTATACCAGTTTAAAGCCCACCTCTTCTGTCCAAAATAATGACTTTGCCATCGATAATCCCTGC TCCATACAATTTGATCTGTGGGAAGATTTCTCAGCGCAGTGTAGGCCAGAGACGGGCAAAGCGAAGGACTGCCCAATATACAATCAACTGTGCGTGATAT TCTCAGATACATTAGGAGATGGGAAGTATGCTCAATCTAGCCACTTTGAAGAGTTAGCTGAAAATGGAACTGCACATGCTGTTCCTGGGCAAGAAGCTTG TCATCCCGAAAATAAAGGCCTTCCTACGCCAAGGGCAACGGGGGAGAGGAAAAGGAAACAGGCAATAGAAACACAGCAGTCCCTTGAAGAACAGAACAGA AATGATGATCACCGTGAAGCGGTGGCTGAAGCTTTGGCTGACATGGTTACGGCTTTCAAGCAGAGGAAGGTTGGTCAACGTGAGAAGAAGGATGAAAGGT ATAGCATAAGCAGTTGCATCAGAGTTTTGGATTCGATAAAGGGCATCGACCAAAAGCTCTACTTTGCTGCTCTGGATCTCTTTGAAGACGCAAAGTCGAG GGAGACGTTCATCTCCTTGAAAGGGGATGAGTTTAAGTTGGCTTGGTTGCAGGGCAAGTGTGGTATCCATAGTTTGGCTTCACTTTTTGGGTTTTAG
AA sequence Show only first row Show all	>Lus10002039 pacid=23145670 polypeptide=Lus10002039 locus=Lus10002039.g ID=Lus10002039.BGIv1.0 annot-version=v1.0 MDAEPLNQLKPERTRTRWSPALDKVFADLMVKQIQLGNRPNSFFDKKTWNTIRDEFNSQTDLNFNNNQLRKHFDVLRTRYTSLKPTSSVQNNDFAIDNPC SIQFDLWEDFSAQCRPETGKAKDCPIYNQLCVIFSDTLGDGKYAQSSHFEELAENGTAHAVPGQEACHPENKGLPTPRATGERKRKQAIETQQSLEEQNR NDDHREAVAEALADMVTAFKQRKVGQREKKDERYSISSCIRVLDSIKGIDQKLYFAALDLFEDAKSRETFISLKGDEFKLAWLQGKCGIHSLASLFGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11290			unknown protein		Lus10002039 [exp]	0	1
AT5G26610			D111/G-patch domain-containing...		Lus10001513 [exp]	2.4	0.9226
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	3.0	0.9291
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	4.2	0.9180
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	7.7	0.9171
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10016615 [exp]	8.7	0.8903
AT4G32960			unknown protein		Lus10007456 [exp]	11.5	0.8928
AT1G12390			Cornichon family protein (.1)		Lus10006997 [exp]	11.6	0.8690
AT4G29490			Metallopeptidase M24 family pr...		Lus10008578 [exp]	11.8	0.8916
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10034259 [exp]	12.3	0.8705
AT2G43210			Ubiquitin-like superfamily pro...		Lus10026718 [exp]	12.5	0.8926

Compare expression of checked genes

Lus10002039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.