Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75690 176 / 3e-57 LQY1 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024330 [exp] 197 / 1e-65 AT1G75690 164 / 1e-52 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002906 [exp] 39 / 0.0004 AT3G47650 109 / 1e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023600 [exp] 181 / 2e-59 AT1G75690 193 / 4e-64 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.005G237800 [exp] 180 / 9e-59 AT1G75690 182 / 8e-60 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.009G155700 [exp] 46 / 1e-06 AT3G44020 143 / 4e-44 thylakoid lumenal P17.1 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002040 pacid=23145669 polypeptide=Lus10002040 locus=Lus10002040.g ID=Lus10002040.BGIv1.0 annot-version=v1.0 ATGCAATTAGCCGTAGCAGCAGCAGCAGCTTCGGTTCCAAGTCTACAATCTCCATTACTAGGCTGCCCTCTCAAATCGTCATGTGTAATTTCCCGAAGAA GTTTCATCACTCAATCGCGGCCACGTTTCGTAGTCAGAGTAATCGAGATGGATGCAAACACGGTTACTGCTTTATCAGTTGGTCTAGTCAGCGTGGCGGT AGGGATAGGCATTCCCGTGTTCTACGAGTCCCAAATTAACAATGCTTCAAAGAGGGAAAACACTCAGCCTTGCTTCCCTTGCAGTGGCTCTGGTGCTCAA AAATGCAGATTCTGTGGAGGAGGCGGGACGGTGATTGTCGATCTAGGAGGGGAAGAGAAAGAAGTGTCAAACTGCATCAACTGTGACGGTAATGGTTCTT TGACTTGCACCACATGTCAAGGCTCTGGGATTCAGCCTCGCTACCTCGATCGAAGGGAATTCAAAGACGACGACTGA
AA sequence Show only first row Show all	>Lus10002040 pacid=23145669 polypeptide=Lus10002040 locus=Lus10002040.g ID=Lus10002040.BGIv1.0 annot-version=v1.0 MQLAVAAAAASVPSLQSPLLGCPLKSSCVISRRSFITQSRPRFVVRVIEMDANTVTALSVGLVSVAVGIGIPVFYESQINNASKRENTQPCFPCSGSGAQ KCRFCGGGGTVIVDLGGEEKEVSNCINCDGNGSLTCTTCQGSGIQPRYLDRREFKDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10002040 [exp]	0	1
AT1G07080			Thioredoxin superfamily protei...		Lus10012503 [exp]	2.8	0.9500
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10013083 [exp]	2.8	0.9463
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10030091 [exp]	5.1	0.9507
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10024330 [exp]	7.6	0.9191
AT3G06670			binding (.1.2)		Lus10021547 [exp]	8.8	0.9447
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10012538 [exp]	10.2	0.9467
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10034053 [exp]	12.2	0.9372
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10017100 [exp]	12.2	0.9454
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10015380 [exp]	12.8	0.9369
AT4G21445			unknown protein		Lus10002594 [exp]	14.1	0.9431

Compare expression of checked genes

Lus10002040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.