Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47840 626 / 0 HXK3 hexokinase 3 (.1) AT4G29130 532 / 0 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT2G19860 510 / 3e-178 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT1G50460 422 / 7e-144 ATHKL1, HKL1 hexokinase-like 1 (.1) AT3G20040 408 / 3e-138 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1) AT4G37840 304 / 8e-98 HKL3 hexokinase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024336 [exp] 976 / 0 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10038287 [exp] 511 / 1e-178 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10037588 [exp] 499 / 8e-174 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10012946 [exp] 494 / 5e-172 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10006843 [exp] 483 / 1e-167 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10005019 [exp] 412 / 1e-139 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10025815 [exp] 403 / 7e-135 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10019038 [exp] 399 / 2e-134 AT1G50460 636 / 0.0 hexokinase-like 1 (.1) Lus10011584 [exp] 258 / 1e-80 AT4G37840 374 / 1e-125 hexokinase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G238600 [exp] 782 / 0 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.001G190400 [exp] 523 / 0 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.018G088300 [exp] 523 / 0 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G254800 [exp] 446 / 5e-153 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.009G050000 [exp] 434 / 4e-148 AT1G50460 576 / 0.0 hexokinase-like 1 (.1) Potri.007G009300 [exp] 392 / 6e-132 AT4G37840 520 / 0.0 hexokinase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF03727 [flax] [poplar] Hexokinase_2 Hexokinase CL0108 [flax] [poplar] Actin_ATPase PF00349 [flax] [poplar] Hexokinase_1 Hexokinase
Representative CDS sequence Show only first row Show all	>Lus10002041 pacid=23145671 polypeptide=Lus10002041 locus=Lus10002041.g ID=Lus10002041.BGIv1.0 annot-version=v1.0 ATGTCGTTAATTCCCACCGCTGCCTCGCCGTCGGCCGGATTCTTCCGCCTCTCACCCCCACATGGCCCCTTCACCCAGGCAACCTGCATCAGAAGAATGA CGTCTCTCGGCGCGTTGCGATCCAACCCCGCCAGCATTTCAGTGGCCGGTTCAATCTTAAACAATCTACAGCAGGACTCCGCCACTCCACTCCCCGTCCT CCGCCACGTGGCTGATGCCATGGCCCAAGAAATGAGGGCTGGCCTCGCCGTCGATGGCGGCAGCCAGCTCAAGATGATCCTCAGCTACGTTGACTCCTTG CCCAGCGGGAATGAGAAAGGATTGTTCTATGCGTTGGACCTTGGTGGGACGAATTTCAGGGTGTTGAGAGTTCAGTTGGGTGGGAAGGAAGACAGGGTGA TTGCTACTGAGTCAGAGCAAGTCTCCATTCCTCAAGAGCTCATGTTTGGTACCTCTGAGCAACTGTTCGACTTCATTGCGAACGGGCTGGCGAGATTTGC GGTGAAAGAAAGTGGGGATTTTAAGTTAGAAAATGGGAGGCAGAGGGAGATTGGCTTCACATTTTCCTTCCCAGTGAGGCAGACCTCTATTTATTCTGGC TTACTTATCAAATGGACTAAAGGATTTGCAGTCTCCGGAACGGCTGGAAGAGATGTTGTTGCCTGTTTGAATGAAGCAATGGAGAGGCAATCATTGGACA TGAGGGTGTCTGCCCTGGTTAATGATACAGTTGGGACACTAGCCGGAGCTAGATACTGGGATGATGATGTTATGGTTGCTGTGATATTGGGTACTGGGAC CAACGCTTGTTATGTAGAAAAAATAGATGCAATTCCAAGACTACATGGCACAATCTCATCTTCTGGAACAACTATTATCAATACCGAATGGGGAGCTCTC TCGAATGGTATACCGTTGACTCTGTTCGATAGAGACATGGATGATGCTAGTATCAACCCAGGAGAACAGATATTTGAGAAGACAATTTCGGGAATGTATC TAGGAGAAATCGCTCGAAGAGTGCTACTGAAGATGGCACAAGATGGGGATTTGTTTGGCAGAGCTGTCCCTGACAAACTATCCACCCCTTTCAGTCTCAG AACTCCAGATCTTTGTGCAATGCACCAAGACAATTCTGACGATCTTCAAACTGTTGGCGCCACACTCTACAACGTTGCTGGGGTGGAGTCCAACTTGAGC TCAAGGAGAGTGGCGTTGGAGGTGTGCGATGCGATTGTAAAACGAGGAGGAAGGCTAGCGGGAGCAGGCATTGTGGGGATCCTGCAGAAGATGGAGGAGG ACTCTAAGGGTTTAATATACGGGAAGCGGACAGTAGTGGCCATGGATGGTGGCCTTTATGAGCATTACCCTCAGTACAGAGACTACTTGCAAGATGCTGT GGTAGAGCTCTTGGGTCCACAAGTTTCAAGCAACATAGTGATTGAACATTCTAAAGATGGGTCTGGCATTGGAGCTGCTCTCTTGGCTGCTACCAACTCT AAGTATCAACATTGA
AA sequence Show only first row Show all	>Lus10002041 pacid=23145671 polypeptide=Lus10002041 locus=Lus10002041.g ID=Lus10002041.BGIv1.0 annot-version=v1.0 MSLIPTAASPSAGFFRLSPPHGPFTQATCIRRMTSLGALRSNPASISVAGSILNNLQQDSATPLPVLRHVADAMAQEMRAGLAVDGGSQLKMILSYVDSL PSGNEKGLFYALDLGGTNFRVLRVQLGGKEDRVIATESEQVSIPQELMFGTSEQLFDFIANGLARFAVKESGDFKLENGRQREIGFTFSFPVRQTSIYSG LLIKWTKGFAVSGTAGRDVVACLNEAMERQSLDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVEKIDAIPRLHGTISSSGTTIINTEWGAL SNGIPLTLFDRDMDDASINPGEQIFEKTISGMYLGEIARRVLLKMAQDGDLFGRAVPDKLSTPFSLRTPDLCAMHQDNSDDLQTVGATLYNVAGVESNLS SRRVALEVCDAIVKRGGRLAGAGIVGILQKMEEDSKGLIYGKRTVVAMDGGLYEHYPQYRDYLQDAVVELLGPQVSSNIVIEHSKDGSGIGAALLAATNS KYQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10002041 [exp]	0	1
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10018761 [exp]	1.4	0.8184
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10037939 [exp]	7.5	0.7952
AT2G40070			unknown protein		Lus10030402 [exp]	8.2	0.8132
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10011823 [exp]	11.3	0.6937
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	14.8	0.7846
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10017535 [exp]	17.3	0.7456
AT5G10080			Eukaryotic aspartyl protease f...		Lus10016434 [exp]	18.6	0.7131
AT2G30933			Carbohydrate-binding X8 domain...		Lus10001516 [exp]	19.1	0.7720
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	20.0	0.7712
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	24.8	0.7453

Compare expression of checked genes

Lus10002041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.