Plant FIBer expression Database

Lus10002042 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13560 81 / 6e-19 AAPT1, ATAAPT1 aminoalcoholphosphotransferase 1 (.1.2)
AT3G25585 75 / 9e-17 AAPT2, ATAAPT2 aminoalcoholphosphotransferase (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034410
[exp]
86 / 9e-21 AT3G25585 509 / 0.0 aminoalcoholphosphotransferase (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G133800
[exp]
91 / 3e-22 AT1G13560 695 / 0.0 aminoalcoholphosphotransferase 1 (.1.2)
Potri.008G109833
[exp]
79 / 4e-18 AT1G13560 684 / 0.0 aminoalcoholphosphotransferase 1 (.1.2)
Potri.T031036
[exp]
79 / 4e-18 AT1G13560 682 / 0.0 aminoalcoholphosphotransferase 1 (.1.2)
PFAM info
Representative CDS sequence
>Lus10002042 pacid=23145668 polypeptide=Lus10002042 locus=Lus10002042.g ID=Lus10002042.BGIv1.0 annot-version=v1.0
ATGTTCATGACAAGTCCGTTTGTTTGCTCTTGCTTCCCGAGTTCACTTGAAGGAGACAGTCTTTATGGGACTTCACCAAGACACTTGCTTTCTGGATTTT
TAGTTATTTTCTACCATTCTGGCTTGTTAATCACCATTTACCGCTATTCCAATCTGAGGGATGGGGTACATCGATCCCATGGACTTGCAGCACTTCATAG
ATACAAATACAGCGTAGTTGGTCACTCATATGTTGCCAAATATGTCTTGCAGCCCTTCTGGTCTAGATGCGTTTACTTCTTCCCTCTATGGATGCCACCA
AACATGATAAGCAATCCATTCTATTTAGCAACATGGGAAAGCTTTATCCCTTCATCGTGCGGATGGGAGATCCTAGTTTGGTAA
AA sequence
>Lus10002042 pacid=23145668 polypeptide=Lus10002042 locus=Lus10002042.g ID=Lus10002042.BGIv1.0 annot-version=v1.0
MFMTSPFVCSCFPSSLEGDSLYGTSPRHLLSGFLVIFYHSGLLITIYRYSNLRDGVHRSHGLAALHRYKYSVVGHSYVAKYVLQPFWSRCVYFFPLWMPP
NMISNPFYLATWESFIPSSCGWEILVW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G13560 AAPT1, ATAAPT1 aminoalcoholphosphotransferase... Lus10002042
[exp]
0 1
AT5G47670 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6"... Lus10028845
[exp]
1.4 0.7777
AT4G02210 unknown protein Lus10032996
[exp]
6.9 0.6942
AT1G42480 unknown protein Lus10013214
[exp]
7.3 0.5455
AT5G33340 CDR1 CONSTITUTIVE DISEASE RESISTANC... Lus10022912
[exp]
8.0 0.6825
AT3G46290 HERK1 hercules receptor kinase 1 (.1... Lus10023325
[exp]
9.3 0.6837
AT3G07200 RING/U-box superfamily protein... Lus10018271
[exp]
12.0 0.6112
AT1G08080 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANH... Lus10021456
[exp]
17.8 0.6164
AT1G75250 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-... Lus10023564
[exp]
18.2 0.6604
AT4G18360 Aldolase-type TIM barrel famil... Lus10042495
[exp]
18.7 0.6146
AT4G22200 AKT3, AKT2/3 potassium transport 2/3 (.1) Lus10003644
[exp]
22.6 0.6077

Lus10002042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.