Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37920 221 / 1e-69 EMB1513 embryo defective 1513, copper ion transmembrane transporters (.1) AT2G07750 84 / 4e-17 DEA(D/H)-box RNA helicase family protein (.1) AT1G63250 76 / 1e-14 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024339 [exp] 583 / 0 AT2G37920 245 / 8e-79 embryo defective 1513, copper ion transmembrane transporters (.1) Lus10034440 [exp] 73 / 3e-15 AT1G63250 161 / 1e-46 DEA(D/H)-box RNA helicase family protein (.1) Lus10019121 [exp] 72 / 1e-14 AT1G63250 166 / 1e-48 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103600 [exp] 246 / 4e-78 AT2G37920 250 / 4e-82 embryo defective 1513, copper ion transmembrane transporters (.1) Potri.006G092100 [exp] 232 / 1e-72 AT2G37920 243 / 1e-79 embryo defective 1513, copper ion transmembrane transporters (.1) Potri.001G107300 [exp] 80 / 1e-15 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G124100 [exp] 74 / 6e-14 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002043 pacid=23145672 polypeptide=Lus10002043 locus=Lus10002043.g ID=Lus10002043.BGIv1.0 annot-version=v1.0 ATGTATCGGGAGGCCAGAGATGAAACATTTCCTCCACAAATCATCTGCTGCAGCTCCGTCGCCGGGGAAAATTGGATAATCACCGCTGAGATGGCGCTAT CATTGCCAACACATCTCTCCTTCTTCAAACCCCCAATACCAGAATACTGCCTCTTCCTCTCCAAATTCTCCCACCTCTCAATACATCCAAAACCAGTCCC TAGGAAACTCACCGTAATCCGAATGGGCGGCGGCCCACGCACCTACCCCGGTGGGGTATCGCGGTGGCAGTGGAAGCGCATGCAGGCAAAGAAAGCCAAG CAGCTCCTCAAGGCCCGGCTTAGCCGGGAGAGGCAAATCTACGAAATGCGAAAGCGAGCTGAGCTTAAAGCCGCCGTCGCCGACCTAGAACGGCCATGGG AGGTTGTCAACAAAGCCCCGAATCTGTTCTCGGTGAGCGCCGATGAGCAGGTGAAGGTCCTGGCGGATAGGTTTCAGAAACCCGGCGGGTTTGATCTGTG GACGGATAGAGACGGCCCGCAATTGTTTAAGACTCATGACGGCATCCCTTCCGCTAGGTTTTTCCCTAAGGGAGTTGTTCATAGCGTAAAACCGTACGGG AAGGTTGAGGGACTGGATGATGATGATGATGATGAAGATGGGGAATCAAGCAGAGTTGAGAGATGGAGGGATCGAAGAGGTGAGTCTGAGATGAATGGAG TGGAGAGACATGGGAGGAGAAGGAGGTTTAGGGATTTGAATTTTCCGGAAGAGGAATCAGGTTTAGAAGCTGGGAATTTGAATAATGCTACTAGTGCAAA TTCAGGGGTCAATAGAAATGGATTGGGGAGAAGAGGATCGGAGTATTTGAAGTATTCTAGTGCAAATTCAGGGATCAATAGAAATGTCTTAGGGAGAAAG GGATCAGAGAATTTGAATAATTCTGGTGGAAACTCAACCTTGAATAGAAATGGTGGTGAAATGAGGAGGACCAAAGGGAACAGGAGATTTGGGAATTCTG GGGAGGAATTAGGATCTGGTCAAGTTGTTTATCAGAGAAAGTTGACTGGAAGACCATCGTCTAACAAGAGTAGTAGTAGTAGTAGCAGCAGTAGGATCCA GAACAAAAGTAATGGTAGGATTCAGAACAATGGTGATGTTGGGGGACAAGTTTCAGTGAATTCCAGGAATTATGATGCGAAGCGGGGAGGAAGGAATTTG TCAAGCAGAAGGGATCACCGACCTAGTTGGACCCGGAACGAGAAGAATAGAAGTCAGGGATATGTGAAGTCGAGGAGTTCTTGTGAGTCTGAAGAAGTTT ATGATATGAGATTGCAACAGGATGGGAGTTATGGATTCCCAGGTCGTCAGTCTTGA
AA sequence Show only first row Show all	>Lus10002043 pacid=23145672 polypeptide=Lus10002043 locus=Lus10002043.g ID=Lus10002043.BGIv1.0 annot-version=v1.0 MYREARDETFPPQIICCSSVAGENWIITAEMALSLPTHLSFFKPPIPEYCLFLSKFSHLSIHPKPVPRKLTVIRMGGGPRTYPGGVSRWQWKRMQAKKAK QLLKARLSRERQIYEMRKRAELKAAVADLERPWEVVNKAPNLFSVSADEQVKVLADRFQKPGGFDLWTDRDGPQLFKTHDGIPSARFFPKGVVHSVKPYG KVEGLDDDDDDEDGESSRVERWRDRRGESEMNGVERHGRRRRFRDLNFPEEESGLEAGNLNNATSANSGVNRNGLGRRGSEYLKYSSANSGINRNVLGRK GSENLNNSGGNSTLNRNGGEMRRTKGNRRFGNSGEELGSGQVVYQRKLTGRPSSNKSSSSSSSSRIQNKSNGRIQNNGDVGGQVSVNSRNYDAKRGGRNL SSRRDHRPSWTRNEKNRSQGYVKSRSSCESEEVYDMRLQQDGSYGFPGRQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37920		EMB1513	embryo defective 1513, copper ...		Lus10002043 [exp]	0	1
AT2G37920		EMB1513	embryo defective 1513, copper ...		Lus10024339 [exp]	1.4	0.9353
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001634 [exp]	2.6	0.9402
AT1G45230			Protein of unknown function (D...		Lus10006488 [exp]	5.2	0.9130
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000036 [exp]	7.1	0.8993
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10038297 [exp]	11.0	0.8815
AT1G16080			unknown protein		Lus10024094 [exp]	11.7	0.8956
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10012243 [exp]	12.8	0.9034
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037013 [exp]	13.7	0.8698
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014694 [exp]	14.4	0.8935
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000035 [exp]	15.8	0.8918

Compare expression of checked genes

Lus10002043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.