Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002045 pacid=23162018 polypeptide=Lus10002045 locus=Lus10002045.g ID=Lus10002045.BGIv1.0 annot-version=v1.0 ATGGCACAAGCTAAAGAGATCCTTTTCGGATATTACTCTCAATCAGCTAACACAATGCCATCTTTCTTCGATGTTTGGGGGTTGAATAATTTCATCATGC AAGGGGGGTTGAACCCAAACCAAACTCAGCTGGTCCCATGTACAATGCAATTAATGCACCCAAATCTGGAGATTGGTGGCGGTTTTGTGGAGTTCCAACC AACCGGGGTTGGGCACCACCGGGTGATTATAGATTGGAGTCTCATTCACATTAATCGCAGGGCGTTGCTAATTGACAACTTTTGGCTCAAAGTTAGTGCA GTTTGGCTGAACCAAGGCTATCTGAACCTATTTTGCCACCAACCTTCTCTTGGTGTGGACATGACTCCCGGTGAACAAGTAAATCAATTCCAGCAACCTC GTCGGCTTGGTGACGCCTTCACTACTGAGAGCAACATTATCTACGTTATGTGTGAAGTGCCGTTCGATGCGTTCATTGCAAGTTTGAACCTGCGAAATAA CTACCCAATCAACAACCTAATGAGTGATCTGCCCCTTCCGGCTCTGTTAAGCCTATCCTCCATGGATATGTTCTTTACAGTGGATATATTTCCAACGACG ATAACTATTGATAATGTTGGAAACCGCTTTTTGACGTTCATATTCTCTACAAGGTGTCTTGCTGACGCTCAAGTGCATCCACTTGAAGTTGAAGGCAGAG ACATCATTCAAACTCCCAATCGGTTCGTTACTGTTTTATGCGGCTCTCGGTTTGGGGTTTTGGAGCTCTCCTTTCATTGGCTCTAG
AA sequence Show only first row Show all	>Lus10002045 pacid=23162018 polypeptide=Lus10002045 locus=Lus10002045.g ID=Lus10002045.BGIv1.0 annot-version=v1.0 MAQAKEILFGYYSQSANTMPSFFDVWGLNNFIMQGGLNPNQTQLVPCTMQLMHPNLEIGGGFVEFQPTGVGHHRVIIDWSLIHINRRALLIDNFWLKVSA VWLNQGYLNLFCHQPSLGVDMTPGEQVNQFQQPRRLGDAFTTESNIIYVMCEVPFDAFIASLNLRNNYPINNLMSDLPLPALLSLSSMDMFFTVDIFPTT ITIDNVGNRFLTFIFSTRCLADAQVHPLEVEGRDIIQTPNRFVTVLCGSRFGVLELSFHWL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002045 [exp]	0	1
AT5G01660			unknown protein		Lus10018307 [exp]	1.7	0.9945
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002046 [exp]	2.4	0.9927
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018194 [exp]	3.2	0.9889
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Lus10026566 [exp]	3.3	0.9815
AT5G66440			unknown protein		Lus10025994 [exp]	3.5	0.9869
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	3.5	0.9910
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	4.5	0.9900
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10019106 [exp]	4.5	0.9816
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	4.9	0.9855
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10027123 [exp]	5.9	0.9864

Compare expression of checked genes

Lus10002045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.