Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26120 285 / 3e-89 TEL1 terminal EAR1-like 1 (.1) AT1G67770 148 / 7e-39 TEL2 terminal EAR1-like 2 (.1) AT5G61960 108 / 1e-24 AML1 MEI2-like protein 1 (.1.2) AT5G07290 103 / 4e-23 AML4 MEI2-like 4 (.1) AT1G29400 102 / 7e-23 AML5 MEI2-like protein 5 (.1.2) AT4G18120 100 / 6e-22 AML3 MEI2-like 3 (.1.2) AT5G07930 93 / 3e-21 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT2G42890 91 / 6e-19 AML2, MEI2 MEI2-like 2 (.1.2.3) AT1G37140 85 / 2e-18 MCT1 MEI2 C-terminal RRM only like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036953 [exp] 566 / 0 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10006234 [exp] 538 / 0 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10002047 [exp] 160 / 3e-46 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1) Lus10004591 [exp] 100 / 6e-22 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10011968 [exp] 100 / 8e-22 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2) Lus10020769 [exp] 99 / 1e-21 AT1G29400 786 / 0.0 MEI2-like protein 5 (.1.2) Lus10043204 [exp] 99 / 1e-21 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2) Lus10007346 [exp] 96 / 2e-20 AT1G29400 779 / 0.0 MEI2-like protein 5 (.1.2) Lus10018195 [exp] 87 / 2e-18 AT1G37140 128 / 2e-35 MEI2 C-terminal RRM only like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051100 [exp] 174 / 2e-47 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.008G183000 [exp] 173 / 4e-47 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.012G107100 [exp] 105 / 1e-23 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.015G106000 [exp] 103 / 3e-23 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.005G202000 [exp] 100 / 6e-22 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.001G067300 [exp] 99 / 1e-21 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.002G059800 [exp] 98 / 2e-21 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2) Potri.003G162700 [exp] 97 / 7e-21 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.013G084400 [exp] 92 / 7e-20 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1) Potri.002G088200 [exp] 86 / 5e-18 AT1G37140 159 / 3e-46 MEI2 C-terminal RRM only like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF04059 [flax] [poplar] RRM_2 RNA recognition motif 2 CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10002046 pacid=23162017 polypeptide=Lus10002046 locus=Lus10002046.g ID=Lus10002046.BGIv1.0 annot-version=v1.0 ATGGGAGACGCCAGCGGTGGGTACTTCCGTTTCCCCGCCTCCCTCGACCCCCAAGCGAATGAATTCCGCCCCCGGAACCACCACCACGACGTCATTACTC CACACCACCTCGCCGTCATCCCTTCGCCTCCCCAACCCTTCTACTACCAGCTTCCTCCTCCTCTGCCGCCGCCGCCGGTGCCGTTTGTAGGTGGCGGAGC GGTGATCGGCTACCAACAGGATCCTTTTCCCAACCATAGTAATTACGACTGTACACCTCCCCGGGTGAGGGCCGTCCAGATGGAGAGAATCCGCGACGGG ATCGTCACCGTCCACTTCTACGACCTCCGCCACGCCGAGGCGGCGCTCCGCGACCACCACCACCTCCACATGCACCACCACAACAACAACAACAACAGCA GCTGCCCTTTCTCCGGCTGGTCCACAGTGTGGGCCCAGTTTACAATCCCGTCGATTCACGCCATGCCTGAAGGTCAAAACCAAGGCACGATCGTCGTCTT CAATCTCGACCCAAACGCCTCGGCTTCCTATCTCCGACACATCTTCCAATCCCACGGAGCGGTCAAAGAGATTAGAGAAACGCCCATGAAGAGGCAGCAG AGGTTCGCCGAATTCCACGATCTGAGAGACGCCGCCAGGGTGTTGAACGACATGAACGGGATGGATATTCTGGGGAAGCCGGTAGTGATCAAGTTCAGCA GACCCGATGGGTTGAACAAGAAGTTGTCTTTCATCAATTCATCTTCCTCCTCCAAAATCACTACTCCCAAGTTCATCCCATTGATTCCTCCGGCGAGGAG GTTTACCAACAGTCCTCCTCCTCCGTTAGCTCCTTGGCCGATTGTTAGGAGGAATTCGAGCATTGAACTACCAGAGAAAGGGATAATGAAGTTCAGCCAA AGTAAGCCATGGAAAGGTGGGAAAGCTGGGAGAAACTGTAACAATTTATATGATAGCAGGTACTTGATAAACGACGATGAACCATTCAAGGAATCATCAT CATCATCGAAGAAATGGAGCAGTAGTAGTACTGATTTGAGAACTACTGTAATGATAAAGAACATACCCAACAATCAGAAGCTGCTATTGAACATGCTGGA CAACCACTGCAATGAACAGATCACCAATCATGATGATAATAAAGATGGAGAAGAAAAGAAGCAGCCTTTCTCATCATATAATTTCCTCTATCTCCCAATT GATTTCAAAAACAAGTGCAATGTGGGATATGGGTTTGTGAACATGACATCTCCCGAGGGAGCAAGGAGGCTGCACAAGGCTTTCAACAACCAGCATTGGG AGGTTTTCAACTCCAAGAAGATCTGTGAAGTGACCTATGCTAGAGTCCAGATGTATGCCGGAGATGACGTCTCTGTCCAAATCCAAACTGATCTCAACTC TCCAGCCAATGTCCCCGCCGATTCCATCTCCACCGTCGACGAATTCCATGACGACTTTCTCTATTTCTACCAAGCCGAGCTGTCCGATGAATACCTTGTC TCCTCGCATTAA
AA sequence Show only first row Show all	>Lus10002046 pacid=23162017 polypeptide=Lus10002046 locus=Lus10002046.g ID=Lus10002046.BGIv1.0 annot-version=v1.0 MGDASGGYFRFPASLDPQANEFRPRNHHHDVITPHHLAVIPSPPQPFYYQLPPPLPPPPVPFVGGGAVIGYQQDPFPNHSNYDCTPPRVRAVQMERIRDG IVTVHFYDLRHAEAALRDHHHLHMHHHNNNNNSSCPFSGWSTVWAQFTIPSIHAMPEGQNQGTIVVFNLDPNASASYLRHIFQSHGAVKEIRETPMKRQQ RFAEFHDLRDAARVLNDMNGMDILGKPVVIKFSRPDGLNKKLSFINSSSSSKITTPKFIPLIPPARRFTNSPPPPLAPWPIVRRNSSIELPEKGIMKFSQ SKPWKGGKAGRNCNNLYDSRYLINDDEPFKESSSSSKKWSSSSTDLRTTVMIKNIPNNQKLLLNMLDNHCNEQITNHDDNKDGEEKKQPFSSYNFLYLPI DFKNKCNVGYGFVNMTSPEGARRLHKAFNNQHWEVFNSKKICEVTYARVQMYAGDDVSVQIQTDLNSPANVPADSISTVDEFHDDFLYFYQAELSDEYLV SSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002046 [exp]	0	1
AT5G01660			unknown protein		Lus10018307 [exp]	1.0	0.9988
					Lus10041871 [exp]	1.4	0.9963
					Lus10002045 [exp]	2.4	0.9927
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	4.9	0.9892
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10011333 [exp]	5.0	0.9887
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018194 [exp]	6.3	0.9861
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	7.0	0.9878
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10027123 [exp]	8.5	0.9851
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	8.8	0.9883
					Lus10016534 [exp]	9.4	0.9833

Compare expression of checked genes

Lus10002046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.