Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26120 167 / 4e-48 TEL1 terminal EAR1-like 1 (.1) AT1G67770 144 / 5e-40 TEL2 terminal EAR1-like 2 (.1) AT4G18120 100 / 3e-24 AML3 MEI2-like 3 (.1.2) AT1G37140 96 / 7e-24 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT5G61960 97 / 3e-23 AML1 MEI2-like protein 1 (.1.2) AT5G07290 96 / 8e-23 AML4 MEI2-like 4 (.1) AT1G29400 96 / 8e-23 AML5 MEI2-like protein 5 (.1.2) AT5G07930 77 / 1e-16 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT2G42890 68 / 4e-13 AML2, MEI2 MEI2-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036953 [exp] 232 / 1e-72 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10006234 [exp] 213 / 8e-66 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10002046 [exp] 162 / 6e-47 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1) Lus10018194 [exp] 98 / 9e-24 AT1G37140 143 / 1e-40 MEI2 C-terminal RRM only like 1 (.1.2) Lus10018195 [exp] 96 / 4e-23 AT1G37140 128 / 2e-35 MEI2 C-terminal RRM only like 1 (.1.2) Lus10025640 [exp] 93 / 9e-23 AT1G37140 131 / 3e-37 MEI2 C-terminal RRM only like 1 (.1.2) Lus10004591 [exp] 96 / 2e-22 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10043204 [exp] 96 / 2e-22 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2) Lus10011968 [exp] 95 / 2e-22 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051100 [exp] 184 / 2e-54 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.008G183000 [exp] 183 / 6e-54 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.013G084400 [exp] 97 / 1e-23 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1) Potri.012G107100 [exp] 98 / 2e-23 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.002G088200 [exp] 96 / 4e-23 AT1G37140 159 / 3e-46 MEI2 C-terminal RRM only like 1 (.1.2) Potri.015G106000 [exp] 96 / 8e-23 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.002G059800 [exp] 96 / 2e-22 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2) Potri.005G202000 [exp] 95 / 2e-22 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.001G067300 [exp] 92 / 2e-21 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.003G162700 [exp] 92 / 3e-21 AT5G07290 645 / 0.0 MEI2-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF04059 [flax] [poplar] RRM_2 RNA recognition motif 2
Representative CDS sequence Show only first row Show all	>Lus10002047 pacid=23162002 polypeptide=Lus10002047 locus=Lus10002047.g ID=Lus10002047.BGIv1.0 annot-version=v1.0 ATGGAGTCTACCGTCAGGTCCGCCATTGATTTGGATAACGATATTTTCAAATACCCCGTTACCCGACGTGCAGCCCCAGTAATATCAAGGGCTGTGAGAT ACACTGTAGCACAGTGGTGGGAGGAAGCGAATGTGTTAATGGCTTTTCTTTTGACAATTCTGTCTTCTCCTCGAGCTAAAGTTGCCAATGAAAAGTGTCC TTTCCTTTACCCTTTTGCTTCTTCTTATTCACAGGTGGGAGGAGGAGGAGGGGAATTTACATCAGAAGCTGCTGTTGAAGATGCTGGACAACCACGCAAT GACCAGATCACCAATCATGATGATAATGAAGATGGAGAAGAAAAGAAGCAGCCTTTCTCATCATATGATTTCCTCTATCTCCCAATTGATTTCAATTCTC TGGCTAGCAACAAGTGCAATGTGGGATATGGGCTTGTGAACATGACATCTCCAGAGGGAGCAAGGAGGCTGCACAAGGCTTTCAACAACCAGCATTGGGA GGTTTTTAACTCCAAGAAGATTTGTGAAGTGACCTATGCTAGAGTCCAGGGTTTGGAGGCATTGAAGGAGCATTTCAAGAACTCGAAATTTCCAAGCGAG GTGGAGCATTATCTCCCTGTGGTTTTCTCACCACCTAGAGATGGGAGCCAGTCCCTATTCTTTATGGTCTGA
AA sequence Show only first row Show all	>Lus10002047 pacid=23162002 polypeptide=Lus10002047 locus=Lus10002047.g ID=Lus10002047.BGIv1.0 annot-version=v1.0 MESTVRSAIDLDNDIFKYPVTRRAAPVISRAVRYTVAQWWEEANVLMAFLLTILSSPRAKVANEKCPFLYPFASSYSQVGGGGGEFTSEAAVEDAGQPRN DQITNHDDNEDGEEKKQPFSSYDFLYLPIDFNSLASNKCNVGYGLVNMTSPEGARRLHKAFNNQHWEVFNSKKICEVTYARVQGLEALKEHFKNSKFPSE VEHYLPVVFSPPRDGSQSLFFMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002047 [exp]	0	1

Compare expression of checked genes

Lus10002047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.