Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07610 170 / 4e-44 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT1G62310 138 / 9e-34 transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G11950 133 / 4e-32 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT4G00990 118 / 3e-27 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 108 / 3e-24 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 55 / 1e-07 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002391 [exp] 632 / 0 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10027890 [exp] 578 / 0 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10015260 [exp] 260 / 1e-75 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004602 [exp] 185 / 4e-52 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10025380 [exp] 191 / 9e-52 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004549 [exp] 135 / 1e-32 AT3G07610 173 / 8e-49 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020033 [exp] 122 / 1e-28 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10037812 [exp] 120 / 7e-28 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10017092 [exp] 118 / 2e-27 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G082901 [exp] 245 / 3e-69 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.005G091200 [exp] 236 / 2e-66 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.004G006200 [exp] 140 / 2e-34 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.015G012800 [exp] 127 / 6e-30 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.011G009700 [exp] 125 / 2e-29 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.013G019000 [exp] 114 / 4e-26 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.011G041400 [exp] 104 / 5e-23 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.004G032700 [exp] 104 / 6e-23 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.005G027000 [exp] 70 / 3e-12 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002051 pacid=23162015 polypeptide=Lus10002051 locus=Lus10002051.g ID=Lus10002051.BGIv1.0 annot-version=v1.0 ATGAATGGAGGAGTTGAGAACGGGAACGAGACTGTCAATGGTGAAGAAGAAGCGATTGATGCAATGGAGGTGGAGGTCCAAGGTCTTGCGAGCGTTGAGG CGGTCAAGAAGGAAGATACTTCGCCGTCGTTGGAGCGCGATGGAGGGGATCGGAATCTTGAGGAGAAGGAGAGTGATGCGATGATGAATGGAGGAGCCAA GAAAGAGAAAGCTCCATCCTTCAATGAAGAAGAAGCGGAGGAAGAGGCTAATGGAGAGCCTTCTAAAGAGAGGGGAAGGAAAGAAGGTACGAAAAACCAG GGACGAAAAAGTTCGGAGCCTGTCCAGGGAGTGCGTCGCAGTAGCCGAGTTCATAAAACAGTTGCGGAGCCCGATTTGAGTTTTGAGAGTGAGGATGCTT TACCCGTGACAAAGCGACGGGGGACTTCTAAGCCAGTTGAGGAAGACCGTCGCAGCGGTAGCCTAGACCGTAAAAAGACGGTGAGATTTGCTGACTCCGT GTTGAGTTCTAAGAAGAAGCTTGGTTCAACTAAGAGAAAGCAGCGACCGGAGAAGAGTGATACTAAACCTAGCAAGGTGTCTACAAAAGAGGAAAGTTCT GGTCTACAGATACGAGATTTAGTGTATGGAGAGCTCGCTTGTTTGGAAAGGAACCGCAAGCTGTCGTTATCTATTGTTGCGTCTGCTTTTCAGTTCACAG AGAATTACTGTCTGATGTGCCATCAATGCCAGAGAATGACAATTCGTTGCACCAAATGTAAGACTAAGCGATACTGCTTTCCCTGCATAAAGAGATGGTA TCCTAAGATGGCTCAGTATGAAGTTGCAGCTGCCTGCCCTTTTTGCCTTCACAATTGCCATTGTAAATCATGCATGCGTCAGGATGTGGAAATGAAGGAT CTGAAGACTCGGTTGGATGTGAAACCAACTCCCGACCAAAAGAAACAGCATGCTGAATACATGTTGCAACTGCTCTTGCCCTTCTTGAAGCGGATTGATG AGGATCAATTACTTGAGAGAAAGATTGATGGAGGAATCCTAGGGGTGTCGGTAGATGATTTGGACGTGCATGAAGCTGAATGTCCAGCGGATGAGCGCAT GTTCGGTGATATCTGCAAAACTGCTATCTTTGACTACCACAGAAACTGTTCAGAATGTGAATCTGATATTTGCCTTTACTGTTGCCGTGAGACCCGTGAG AACAATCTTCGCAGCGATGTGCCAAGTGTAGTTGTGAAATATGGTGATCAGGGATATAACTACTCACATGGTATAACTGGCAAGAATAAAAAAAAACTCA TCGCTGTGAATGATTTAGCATTTGAAGAGTACACTCATCTTGATGAAGGACCTCTAAATCTTGCATCCAAGCTTCCAGCAAAGTCTCTGAAGCCTGACGT GGGGCCAAAGACTTATATAGCTTATGGTTTCCTGCATGAGCTTGGGCATGGGGACTCTGTTACTAAGCTCCACTGTTACATGTCTGACGCTGTTAATATT TTGGCACATGCTTTTAAGATTGGTTATAAAGGCGATCAGCTTGCCGAAATTGAAAAATTGAAAATACAGCACTTTGAGCAATACAAAAGGGAGCTGTATG GTCTTGGTGAACCCATGGATGGGGTTGATGAAGAGAACAACAACAACAATGAAGATGAACATCACCAAGGTTCCGGGACTGGTGAAATATCAAACAGTTC AGACTCTAAACTGGAAAATGCTCCTCCGACATCACAATTGCACGGTGTGGAGACTCGGACGAAAAGGACCGAGTCTAATGAAGCGTTGAACCGTTTGGAG ACTAAAGTGGAAAGGGTTGAGTGTGAGGATGCGCAGAACAGTTTTGATTTTGGTCAAGTGACAACGAACAAGAACTATAAAACATCACGCAGTATGGAGA TTGATCTGGAAAACCAAGCAGTACGGTCCAAGAGTTGA
AA sequence Show only first row Show all	>Lus10002051 pacid=23162015 polypeptide=Lus10002051 locus=Lus10002051.g ID=Lus10002051.BGIv1.0 annot-version=v1.0 MNGGVENGNETVNGEEEAIDAMEVEVQGLASVEAVKKEDTSPSLERDGGDRNLEEKESDAMMNGGAKKEKAPSFNEEEAEEEANGEPSKERGRKEGTKNQ GRKSSEPVQGVRRSSRVHKTVAEPDLSFESEDALPVTKRRGTSKPVEEDRRSGSLDRKKTVRFADSVLSSKKKLGSTKRKQRPEKSDTKPSKVSTKEESS GLQIRDLVYGELACLERNRKLSLSIVASAFQFTENYCLMCHQCQRMTIRCTKCKTKRYCFPCIKRWYPKMAQYEVAAACPFCLHNCHCKSCMRQDVEMKD LKTRLDVKPTPDQKKQHAEYMLQLLLPFLKRIDEDQLLERKIDGGILGVSVDDLDVHEAECPADERMFGDICKTAIFDYHRNCSECESDICLYCCRETRE NNLRSDVPSVVVKYGDQGYNYSHGITGKNKKKLIAVNDLAFEEYTHLDEGPLNLASKLPAKSLKPDVGPKTYIAYGFLHELGHGDSVTKLHCYMSDAVNI LAHAFKIGYKGDQLAEIEKLKIQHFEQYKRELYGLGEPMDGVDEENNNNNEDEHHQGSGTGEISNSSDSKLENAPPTSQLHGVETRTKRTESNEALNRLE TKVERVECEDAQNSFDFGQVTTNKNYKTSRSMEIDLENQAVRSKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	0	1
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10039056 [exp]	1.4	0.8420
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	2.4	0.8422
AT2G30320			Pseudouridine synthase family ...		Lus10042233 [exp]	2.8	0.8092
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	2.8	0.8312
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10023549 [exp]	6.3	0.7993
AT2G39580			unknown protein		Lus10005958 [exp]	7.1	0.8366
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10025061 [exp]	8.7	0.7823
AT3G58530			RNI-like superfamily protein (...		Lus10015980 [exp]	8.8	0.7929
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10022174 [exp]	10.6	0.8185
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	12.3	0.7698

Compare expression of checked genes

Lus10002051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.