Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62440 85 / 5e-19 Protein of unknown function (DUF3223) (.1) AT2G40030 47 / 3e-05 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT1G45230 42 / 0.0004 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023594 [exp] 432 / 6e-151 AT5G62440 96 / 1e-23 Protein of unknown function (DUF3223) (.1) Lus10011903 [exp] 269 / 7e-85 AT5G62440 96 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10024968 [exp] 263 / 2e-82 AT5G62440 90 / 1e-20 Protein of unknown function (DUF3223) (.1) Lus10009570 [exp] 262 / 6e-82 AT5G62440 88 / 7e-20 Protein of unknown function (DUF3223) (.1) Lus10024794 [exp] 236 / 4e-73 AT5G62440 95 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10024824 [exp] 221 / 7e-68 AT5G62440 84 / 8e-19 Protein of unknown function (DUF3223) (.1) Lus10022837 [exp] 167 / 5e-46 AT5G62440 86 / 4e-19 Protein of unknown function (DUF3223) (.1) Lus10024224 [exp] 115 / 3e-30 ND / Lus10009927 [exp] 95 / 1e-21 ND 37 / 0.009
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033100 [exp] 77 / 8e-16 AT5G62440 181 / 2e-57 Protein of unknown function (DUF3223) (.1) Potri.013G022500 [exp] 67 / 2e-12 AT5G62440 148 / 7e-45 Protein of unknown function (DUF3223) (.1) Potri.013G021800 [exp] 64 / 6e-12 AT5G62440 156 / 9e-49 Protein of unknown function (DUF3223) (.1) Potri.001G111300 [exp] 46 / 5e-05 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.002G125700 [exp] 42 / 0.0004 AT1G45230 210 / 6e-69 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G028300 [exp] 41 / 0.001 AT1G45230 221 / 2e-73 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11523 [flax] [poplar] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Lus10002053 pacid=23162001 polypeptide=Lus10002053 locus=Lus10002053.g ID=Lus10002053.BGIv1.0 annot-version=v1.0 ATGTCGACTCGAGTCCAGAAACGAGCCAGCGGAACCGATGATGCCTGTAAGAAGAAGCAGAAGGGGGAAACTGGAGATGGGCAGTCTGCGGAGAAGGAGA AACTGGTGTATTTCCAGAATCCAGGGTTATACCTGACTCCCCGTCGATGGATTTACCATTTCGACCAGTTGCTTAGCATAGCCATTGTCAATATCCCTAT CCCGCTTGATTACAGAGGCTATGAGCTGCTGGAGTTGGTGGAGAGGGGTCACCCGGAGCCGGAAAAAATTATTGGTTGCGGGGTTGAGTATTTTACAGTC CATACAGATGAAATGTGCAATCGTCACCTCACCTTTGTTGCCGTAAGGAAAGATGGTTCTATGGCCAAGTTCTGCTACAGGAGCTGTTTTAACAATATCA CTCCCTTTCCCGAGGATGCGAAAGATCTTGGTGGTGGTGTTGCTGCTGTTTGTTTATGTCATTTGGGTGGCCCAAGTGGTTTGCGGCTTGATCCTAAATT TGGAGCAATACGTTTATCCGACGAGGAGGTGGTGGAGGGCACTGTCACCTTGGGTCCGGCCAAATTCCGGCCTCCCACTAACCTTAATATGTTTCAATGT TTCAACCTTTTGCTTCTCACCTCGCCACTAAATAAGGCATTCAGTGAGACGCACCATTTGCTGCTCCTGGATTTGCTGAAAAAGGGTGATCCAGAGTGGG AGAAAAAGATTGGTTCCGGGGTTGAATCATTTCAAGTTCGAATCCATCCAATGTACGACAGCAGGCTGAGAAGCTTCTTCCTTGTTAGGGGAGATGGTTC TGTGGAGGATTTCTGCTATATGAACTGTGTGAACAATATAGTTCCTATGCCGGAGGAATTCATAGAAAAGTTTAATGGTCCTTGTACTTGTCATCATCAA CAAGACGGCGAAGGTGGTGTCGTCACCTTGGGTATGCATAAGTTCCAGACTTCTGCTGAGATTGTTGGGTTCTTGAGGTCACTTCTTAGCCAATGGCCAG ATAATGAACCTACCATTAATTGTGAGCTATTGCACAATAGACTATGGAATTTGCTGAGGAAGGGTGATCCAGAGTGGGGGGAGAAGGAGACTCGTTTTGG GAGTGTCAAATCATTCATAATCCGACAATGCCAATCGGCGTGGCATCGGCGATCCTTTTTCATCGTTTGGGAAAATGGGTCTATAGAGCCTTTTGACGTC ATGACGTGTGTCGACAACATCCTTCCCTTATCAAATGCTGAGAAACACCTAAGTGCTAATTATGTTGCTGCTCGTGGTGCTGGTAAAAGTCCTCATGGAG GAGGTAGAAAAGGTAGTGCTAGCAAAGGAACAAGAGGAAGAGGTCGTGGCCGTCGCGGTCTCCCACATACTTTGGCTTAG
AA sequence Show only first row Show all	>Lus10002053 pacid=23162001 polypeptide=Lus10002053 locus=Lus10002053.g ID=Lus10002053.BGIv1.0 annot-version=v1.0 MSTRVQKRASGTDDACKKKQKGETGDGQSAEKEKLVYFQNPGLYLTPRRWIYHFDQLLSIAIVNIPIPLDYRGYELLELVERGHPEPEKIIGCGVEYFTV HTDEMCNRHLTFVAVRKDGSMAKFCYRSCFNNITPFPEDAKDLGGGVAAVCLCHLGGPSGLRLDPKFGAIRLSDEEVVEGTVTLGPAKFRPPTNLNMFQC FNLLLLTSPLNKAFSETHHLLLLDLLKKGDPEWEKKIGSGVESFQVRIHPMYDSRLRSFFLVRGDGSVEDFCYMNCVNNIVPMPEEFIEKFNGPCTCHHQ QDGEGGVVTLGMHKFQTSAEIVGFLRSLLSQWPDNEPTINCELLHNRLWNLLRKGDPEWGEKETRFGSVKSFIIRQCQSAWHRRSFFIVWENGSIEPFDV MTCVDNILPLSNAEKHLSANYVAARGAGKSPHGGGRKGSASKGTRGRGRGRRGLPHTLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62440			Protein of unknown function (D...		Lus10002053 [exp]	0	1
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	5.6	0.8711
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	7.9	0.8514
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10040519 [exp]	8.8	0.8544
AT1G65270			unknown protein		Lus10026847 [exp]	11.4	0.8459
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	12.2	0.8507
AT1G49420			Heavy metal transport/detoxifi...		Lus10038786 [exp]	14.1	0.8056
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10027463 [exp]	16.0	0.8267
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	16.1	0.8443
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10025967 [exp]	20.2	0.8056
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10017458 [exp]	28.3	0.8203

Compare expression of checked genes

Lus10002053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.