Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74600 930 / 0 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT4G13650 521 / 9e-170 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 437 / 1e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 437 / 4e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33680 418 / 4e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 419 / 3e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 414 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G27610 410 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G40720 410 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 411 / 1e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024220 [exp] 1689 / 0 AT1G74600 924 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 488 / 4e-157 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 441 / 2e-142 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 439 / 1e-141 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 438 / 2e-139 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 435 / 3e-138 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 434 / 1e-137 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 431 / 2e-137 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017082 [exp] 432 / 7e-137 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058900 [exp] 506 / 4e-164 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 476 / 7e-153 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 458 / 6e-147 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 450 / 1e-143 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 439 / 5e-139 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 435 / 9e-139 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G068600 [exp] 439 / 1e-138 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G155100 [exp] 432 / 1e-138 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 437 / 2e-138 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 427 / 7e-137 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10002054 pacid=23162004 polypeptide=Lus10002054 locus=Lus10002054.g ID=Lus10002054.BGIv1.0 annot-version=v1.0 ATGAATCTCCAGCTGAACAGAAATCTGTTTCAGCTGAAAATCGTCCCACAGGTCCTCGCGCGATTCAAATCTTCATTGGCAGCCAAGGCAAATGCACCCT GGGGTACTACCAATCCGGCTCTTGACTTGTTTCACGAGTATGCGAAATCCCCTCATTTGACCCTCCAAAACACACGAATCTTGCATGCCCATTTGCTTGA AACTGGCTTGTTACCTTCCAATCTGTTTGTCGCCAACTCTTTGCTTCGTTGGTATGGTAAATTTGATGCCATGGTCGATGCACTGAAGCTGTTCGACACA ATTCCCCAGCCCAATGTGATTTCTTGGAACACCATGATCTCAAGCTGTAATGGGAACTTTCAGTTTGAAGATTCATGGGGGCTCTTCTGTAGGATGCACA GTTTGAGGTTTCAACCCGATGAGATAACTTATGGGAGTGTTCTTTCTGCTTGTGGTGGCCTCCTTGCTCCTAGTTTAGGTGAACAGGTATACTCGTTCTC CATTAAGAATGGTTTTTGCTCAAGTGGGTATGTTTGTGCAGGAATGATAGATTTGTTGGCGAAAAATGATCGGTTAGAGGATGCTTTCAATGTGTTCGGT TCGGTTAGTTGTGCAAATCTGGTTTGCTGGAATTCGATCATCTCCGGTGCTGTTAGAAATGACCAGAATGTGAGAGCTTTGCATCTTTTTCGACAAATGG GTCATGAGTGTTTGGTGCCGAATAGTTTCACATTCTCTATTGTTTTGACAGCCTGTGTGGCTCTTGCAGACATTCATATTGGAAAAGGAGTACATAGCTG GGTAATAAAGTGCGGTTCCAGGGATGTTTTTGTTGGAACTGCGATAATTGATTTATACGCCAAATGCGGTGATATGGAAGAAGCTTTGAAGGAATTTAAT CGGATGCCCGTGCGCAATGTAGTTTCTTGGACGGCCATTATTTCTGGTTTTGTGAAAAGAGATGATTCCCTTTCTGCCCTCAAAATATTCAGGAAAATGA GGCAAATGAATGAACGGACAAACAATTTTACTATTACTAGTGTTCTCACTGCATGCGCCAAGCCTGACATGACTAAAGAGGCAATCCAACTCCATTGCTG GATTGTCAAAGCTGGATATTATCTCGATGGATCTGTCAGTGCTGCTTTAATTAGCATGTATTCAAAATTAGGTGCTTTAGATCGATCAGAGATGTTGTTT ACAGAAATGAACAAAGTACAGAACTTAGGAATATGGGCTGTTATGATATCTTCTCTTGCTCAGAGTCAAAATTCTCAGAGGGCTGTCGAGATGTTTCGGA GAATGTTACAGGAGGATCAAAGACCTGATAATTTTTGTTATTCTAGTGTCTTGAGTGTTATAAACTGTTTGCATTTAGGGAATCAAATCCACTGCCATGC ATATAAATTTGGATTTGTGCATGATCTTTCTGTTGGAAGTTCGCTTTTCACGATGTACTCAAAGAACGGTAGCATAGAGGACTCTTACAAAGTGTTTCAG CAGATCCCTGTCCGAGACAATGTTTCTTGGACTTCTATGATTGCAGGATTTGCAGAGCATGGCTATGGGGAGCATGCTCTTTCACTTTTGATGGACATGC TGTCAGGAGGAAACAAGCCTGACCAGAGCACATTAACAGCTGCTCTTACTGCATGCTCAGTTCTCCAGTCCATACGTAAGGGGAAAGAAATTCATGGATA TGCTTTCCGAGATGGATTAGGCTCGAAGGAACTTGTTAGTAGTGCGCTTGTTTGTATGTATTCGAAATGTGGTGCTCTGGCATTTGCTAGGAAAGTGTTT GACTTGCTTCCTCAGAAGGATCAAGTCTCATGCTCTTCCTTGGTGTCAGGGTACGCTCAAAATGGCCTTCTTGAAGAGGCAGTGGTACTATTTCAGAAAA TGCTCGTGTCTAATTTCACAGTTGACTCCTTCACAATTTCATCTGCTCTAGGAGCTATTGCACTTTTAAATAGATTGGAGCTTGGAATGCAAGTCCATAC CCTTGTTACAAAACTGGGCCTAGATTCTGAACTTTCTGTTGGGAGTTCACTGGTTACGATGTACTCTCAGTGTGGAAACATCACAGATTGCTCTAAATCG TTTGATCAGATTGTTGATCCTGACCATATAAGTTGGACGTCATTGATAGCAAGCTATGCTACACATGGGAAAGGTGAAGAGGCTTTAGAAGTCTATGAAC ATATGGTCAGAAAGGGAATTAGACCAGATGCAGTGACTTTCATTGAGGTTCTCTCTGCTTGTAGCCATGCTAACTTGGTTGAGAAAGGTGACTTCTACTT CTCTTCGATGACCAGAGACTTCGGAATTGAGCCTGACAATCGTCACTATGCCTCCATGGTTGATCTTCTTGGTCGTTCAGGGGGATTGAAAGAGGCTGAG AGTTTCATCAACAGCATGCCTATTGACCCGGATTCTCTTGTGTGGACAACGCTGCTTGCTGCTTGCAAGTTGCATGGGGATATTGAACTCGGAAAGAAAG CAGCAGAAAAAGCTATGGAACTGGCACCAAGCCGTTCAGGATCTTACATTTCATTGTCCAACATCTTTGCGGATGTAGGCAAATGGAAAGAAGCTGTAGA TATTAGAAGAAGAATGAGTGTAATTGGAGTAAACAAGGAACCTGGCTGGAGTTTCACTTGA
AA sequence Show only first row Show all	>Lus10002054 pacid=23162004 polypeptide=Lus10002054 locus=Lus10002054.g ID=Lus10002054.BGIv1.0 annot-version=v1.0 MNLQLNRNLFQLKIVPQVLARFKSSLAAKANAPWGTTNPALDLFHEYAKSPHLTLQNTRILHAHLLETGLLPSNLFVANSLLRWYGKFDAMVDALKLFDT IPQPNVISWNTMISSCNGNFQFEDSWGLFCRMHSLRFQPDEITYGSVLSACGGLLAPSLGEQVYSFSIKNGFCSSGYVCAGMIDLLAKNDRLEDAFNVFG SVSCANLVCWNSIISGAVRNDQNVRALHLFRQMGHECLVPNSFTFSIVLTACVALADIHIGKGVHSWVIKCGSRDVFVGTAIIDLYAKCGDMEEALKEFN RMPVRNVVSWTAIISGFVKRDDSLSALKIFRKMRQMNERTNNFTITSVLTACAKPDMTKEAIQLHCWIVKAGYYLDGSVSAALISMYSKLGALDRSEMLF TEMNKVQNLGIWAVMISSLAQSQNSQRAVEMFRRMLQEDQRPDNFCYSSVLSVINCLHLGNQIHCHAYKFGFVHDLSVGSSLFTMYSKNGSIEDSYKVFQ QIPVRDNVSWTSMIAGFAEHGYGEHALSLLMDMLSGGNKPDQSTLTAALTACSVLQSIRKGKEIHGYAFRDGLGSKELVSSALVCMYSKCGALAFARKVF DLLPQKDQVSCSSLVSGYAQNGLLEEAVVLFQKMLVSNFTVDSFTISSALGAIALLNRLELGMQVHTLVTKLGLDSELSVGSSLVTMYSQCGNITDCSKS FDQIVDPDHISWTSLIASYATHGKGEEALEVYEHMVRKGIRPDAVTFIEVLSACSHANLVEKGDFYFSSMTRDFGIEPDNRHYASMVDLLGRSGGLKEAE SFINSMPIDPDSLVWTTLLAACKLHGDIELGKKAAEKAMELAPSRSGSYISLSNIFADVGKWKEAVDIRRRMSVIGVNKEPGWSFT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	0	1
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	1.0	0.9551
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013074 [exp]	2.0	0.8889
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10018994 [exp]	2.4	0.9008
AT1G17450			B-block binding subunit of TFI...		Lus10037675 [exp]	2.4	0.8983
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013870 [exp]	5.3	0.8798
AT3G21480			BRCT domain-containing DNA rep...		Lus10037907 [exp]	5.5	0.8874
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	8.0	0.8789
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	8.5	0.8836
AT2G30320			Pseudouridine synthase family ...		Lus10026423 [exp]	8.5	0.8622
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10025377 [exp]	10.2	0.8600

Compare expression of checked genes

Lus10002054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.