Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74640 461 / 7e-163 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 43 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024219 [exp] 629 / 0 AT1G74640 499 / 2e-178 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G115100 [exp] 481 / 8e-171 AT1G74640 479 / 2e-170 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002055 pacid=23162009 polypeptide=Lus10002055 locus=Lus10002055.g ID=Lus10002055.BGIv1.0 annot-version=v1.0 ATGGCCGCAGCTTCTTCAGCCTTGCTCATCAGTATCACCTCCTTGTCCTCTTCCTTCACGGCCGTTTCTCGCGCGAGGAGTTACAAGCCATTTCTCTCCT TCCAACGACGACCCATTTCACTTCAAGCTTCTTCCACTTCTGCTGCTTACTCTTCTTCACCAATTGTTGCCGATAAGCCCTCCACCCCCTTCAAGTCAAA TAGTTGGAGATGGAAGTTCGAGGATAAATCTGTCAGCATTTATTATGAAGAACACTTGAAGGATAGCTCTGATTCACCTAAAGATATTCTCATGATACCA ACAATTTCTGATGTGAGCACTGTGGAGGAATGGAGATCAGCTGCTATTGACATGGTCCAGCGTGTTGGTGGAATCAATTGGCGGGCTACTATTGTTGATT GGCCCGGTTTGGGTTACTCGGATCGGCCAAAGATGGACTACAATGCTGATATCATGGAAAATTTCTTGGTTGATTTCATAAATGCACCTGATAGTCCCCT TAAGAACTCAGCAAATGATTTGGTGGTCGTTGGTGGAGGACATGCTGCCACAATATTACTCCGTGCTGCAAAGAAGGGGTTGATGAAGCCGGCTGCTATT GCAGCTGTTGCACCGACCTGGGCTGGTCCACTGCCTATTGTGTTTGGTCGAGACTCAACCATGGAATCAAGGTATGGTCTACTTAGGGGGACATTGAGGG CACCTGGAGTGGGTTGGATGATGTATAACATGCTGGTCAGCAATGAGAAGTCTATTCAGTCACAGTACAAGTCCCATGTCTATGCTGATCCGGACAACGT GACTAAAGACATTGTTGAGAGCCGATATGCTCTGACGAAAAAGAAGGGTGCACGTTATGCTCCTGCTGCTTTTTTGACTGGTCTGCTTGATCCGGTTAAA TCCAGAGAGGAGTTCCTTGATTTGTTTGCAAGTTTAGATGGGATTACCCCGATCCTCGTTGTGTCATCTAAAGGATCTCCCAAGAGATCAAAAGCAGAGA TGGAAGCTCTTAGAGGAGCAAGTGGGGTGACCAAGTACGTTGAGGTTCCAGGTGCCCTTTTGCCACATGAAGAATATCCTAAGATGGTAGCAGAAGAACT GTTCCACTTTCTGCAAAAATAA
AA sequence Show only first row Show all	>Lus10002055 pacid=23162009 polypeptide=Lus10002055 locus=Lus10002055.g ID=Lus10002055.BGIv1.0 annot-version=v1.0 MAAASSALLISITSLSSSFTAVSRARSYKPFLSFQRRPISLQASSTSAAYSSSPIVADKPSTPFKSNSWRWKFEDKSVSIYYEEHLKDSSDSPKDILMIP TISDVSTVEEWRSAAIDMVQRVGGINWRATIVDWPGLGYSDRPKMDYNADIMENFLVDFINAPDSPLKNSANDLVVVGGGHAATILLRAAKKGLMKPAAI AAVAPTWAGPLPIVFGRDSTMESRYGLLRGTLRAPGVGWMMYNMLVSNEKSIQSQYKSHVYADPDNVTKDIVESRYALTKKKGARYAPAAFLTGLLDPVK SREEFLDLFASLDGITPILVVSSKGSPKRSKAEMEALRGASGVTKYVEVPGALLPHEEYPKMVAEELFHFLQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10002055 [exp]	0	1
AT4G27700			Rhodanese/Cell cycle control p...		Lus10008866 [exp]	14.8	0.8462
AT1G45230			Protein of unknown function (D...		Lus10006488 [exp]	19.3	0.8290
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10013482 [exp]	21.4	0.8247
AT4G28660		PSB28	photosystem II reaction center...		Lus10024959 [exp]	23.7	0.8221
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Lus10019532 [exp]	32.1	0.8157
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	33.9	0.8232
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10023734 [exp]	34.4	0.8214
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10010066 [exp]	34.5	0.7819
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10023782 [exp]	43.7	0.8151
AT1G52590			Putative thiol-disulphide oxid...		Lus10036091 [exp]	53.2	0.8010

Compare expression of checked genes

Lus10002055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.