Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18835 61 / 1e-13 ZF_HD MIF3 mini zinc finger 3, mini zinc finger (.1) AT1G74660 56 / 3e-11 ZF_HD MIF1 mini zinc finger 1 (.1) AT3G28917 52 / 5e-10 ZF_HD MIF2 mini zinc finger 2 (.1) AT4G24660 40 / 9e-05 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT2G18350 39 / 0.0002 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033016 [exp] 49 / 1e-08 AT3G28917 103 / 4e-30 mini zinc finger 2 (.1) Lus10015370 [exp] 45 / 6e-07 AT3G28917 100 / 5e-29 mini zinc finger 2 (.1) Lus10015900 [exp] 38 / 0.0007 AT4G24660 145 / 6e-44 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126600 [exp] 63 / 6e-14 AT3G28917 129 / 5e-40 mini zinc finger 2 (.1) Potri.017G082701 [exp] 62 / 1e-13 AT3G28917 97 / 6e-28 mini zinc finger 2 (.1) Potri.013G108900 [exp] 41 / 4e-05 AT4G24660 171 / 2e-52 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.005G158800 [exp] 40 / 0.0001 AT4G24660 204 / 1e-65 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.002G102900 [exp] 40 / 0.0001 AT4G24660 209 / 9e-68 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.019G081300 [exp] 37 / 0.0009 AT4G24660 166 / 8e-51 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [flax] [poplar] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10002058 pacid=23162003 polypeptide=Lus10002058 locus=Lus10002058.g ID=Lus10002058.BGIv1.0 annot-version=v1.0 ATGATGAAGAAACGGCAAGTGGTGATAAAGAGATCGGAGGCCACGGGAAGAATCTCCACCACTTCGTCGCCGGTGATGGGTAGCTTCCGGTACGGCGAGT GCCAGAAGAACCATGCCGCAAACATCGGAGGTTACGCAGTCCACGGTTTGCGCGAGGTCACTGCCCGCGGGGCCGATAACAAAAAGACCGCCGGACGCCC GCCGCCCTCACGTGCGCCGCGTGCGGATGCCACCGGAACTTCCACCGTCGGGAGGTGGAAACGAATGAAGTGGTTTGTGAGTACTCTCCTCCTAATAACC ACTCCTCTAGTTCTGGTCGCCAGAGTAAAGATAGATTGA
AA sequence Show only first row Show all	>Lus10002058 pacid=23162003 polypeptide=Lus10002058 locus=Lus10002058.g ID=Lus10002058.BGIv1.0 annot-version=v1.0 MMKKRQVVIKRSEATGRISTTSSPVMGSFRYGECQKNHAANIGGYAVHGLREVTARGADNKKTAGRPPPSRAPRADATGTSTVGRWKRMKWFVSTLLLIT TPLVLVARVKID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	0	1
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10002581 [exp]	1.0	0.9110
AT1G31940			unknown protein		Lus10012117 [exp]	3.7	0.9015
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	4.6	0.8899
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10036260 [exp]	5.7	0.8715
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10036185 [exp]	6.0	0.8813
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	7.1	0.8826
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	7.9	0.8769
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10031553 [exp]	9.2	0.8655
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10040912 [exp]	9.5	0.8661
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10007765 [exp]	9.6	0.8830

Compare expression of checked genes

Lus10002058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.